genome.fa.s4014.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004014.1 Hibiscus syriacus cultivar Beakdansim tig00008766_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67396

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
298--349	20	2.6	20	84	6	61	34	9	28	26	1.88
7896--7954	31	1.9	31	89	0	91	42	6	8	42	1.61
7979--8021	22	2.0	22	90	0	68	51	13	0	34	1.42
7969--9033	80	13.0	83	76	15	703	52	13	0	34	1.41
8081--9033	32	34.7	32	68	28	504	52	13	0	34	1.41
8064--9009	54	17.4	55	73	17	521	52	13	0	34	1.41
8285--8333	22	2.2	22	85	3	62	55	12	0	32	1.37
8288--9078	134	5.9	134	84	9	1029	52	12	0	34	1.41
8471--8513	22	2.0	22	100	0	86	51	13	0	34	1.42
8473--8521	22	2.2	22	88	3	71	55	14	0	30	1.40
8639--8687	22	2.2	22	85	3	62	55	12	0	32	1.37
8681--8724	22	2.0	22	82	8	54	54	2	0	43	1.12
8691--8733	22	2.0	22	90	0	68	51	9	0	39	1.34
8747--8795	22	2.2	22	85	3	62	55	12	0	32	1.37
8801--8875	22	3.2	22	75	14	69	54	16	0	29	1.42
8881--8955	22	3.2	23	75	17	82	54	17	0	28	1.43
8959--9001	22	2.0	22	95	0	77	51	11	0	37	1.39
8961--9009	22	2.2	22	85	3	62	55	12	0	32	1.37
8422--9130	54	13.1	54	79	13	716	51	11	0	35	1.40
9013--9115	22	4.5	22	67	7	80	50	9	0	39	1.35
9053--9242	15	11.7	15	82	15	220	52	3	0	44	1.17
9004--9227	67	3.3	67	94	3	371	51	5	0	42	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9488--9592	51	2.1	51	100	0	210	32	13	9	44	1.76
10534--10622	30	3.0	29	85	9	90	56	2	11	30	1.47
10555--10607	14	3.6	14	75	9	61	62	1	5	30	1.29
10571--10622	16	3.4	16	76	10	63	55	1	11	30	1.46
16388--16435	24	2.0	24	100	0	96	54	16	0	29	1.43
16388--16442	24	2.5	21	85	14	67	54	14	0	30	1.41
17754--17827	31	2.4	31	95	0	130	20	35	10	33	1.87
17893--18304	204	2.0	203	96	0	761	29	8	23	39	1.83
28334--28395	30	2.0	30	81	12	72	37	6	14	41	1.72
28491--28612	45	2.7	45	74	2	120	36	9	20	34	1.84
28718--28819	23	4.4	23	68	0	69	23	23	19	33	1.97
28718--28815	46	2.1	46	86	0	133	24	23	17	34	1.96
28718--28827	46	2.4	45	80	6	130	22	23	20	33	1.97
32437--32469	3	11.0	3	100	0	66	33	0	0	66	0.92
38088--38179	17	5.2	17	70	17	55	22	6	2	68	1.24
38137--38182	17	2.7	18	87	12	62	17	6	0	76	1.00
41568--41651	27	3.1	27	100	0	168	25	28	3	42	1.71
42429--42486	17	3.4	17	97	0	107	20	36	32	10	1.87
42754--42801	24	2.0	24	91	0	78	29	20	4	45	1.70
46877--46979	48	2.1	48	87	0	143	21	19	20	38	1.93
46952--46992	7	5.9	7	78	21	50	4	29	24	41	1.75
46952--46998	16	3.2	16	77	22	66	8	29	23	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46944--46998	28	2.0	28	92	0	92	10	29	21	38	1.88
50788--50839	13	3.8	14	85	10	63	46	36	0	17	1.48
53069--53129	32	1.9	32	93	0	104	14	13	11	60	1.59
53844--53880	15	2.7	14	84	16	51	13	21	10	54	1.69
53844--53886	12	3.2	13	78	18	52	13	20	11	53	1.71
55091--55145	6	10.0	6	77	15	57	80	1	16	1	0.90
55088--55145	11	5.5	11	80	13	68	81	1	15	1	0.86
55088--55145	16	3.6	15	86	13	80	81	1	15	1	0.86
56318--56471	34	4.5	34	91	0	245	35	23	7	33	1.84
56345--56404	17	3.3	20	62	33	53	35	23	6	35	1.81
56790--56876	33	2.6	33	71	10	79	36	17	11	34	1.86
56986--57105	33	3.6	34	74	11	108	31	18	12	37	1.88
57169--57448	40	6.5	45	68	17	166	26	32	16	24	1.96
57282--57440	83	1.9	84	87	6	232	26	33	15	24	1.95
57217--57832	127	4.8	126	86	3	689	28	28	18	24	1.98
57366--57902	254	2.1	254	83	4	679	28	26	18	25	1.98
58582--58633	13	3.8	14	85	10	63	46	36	0	17	1.48
62428--62529	29	3.4	29	80	7	116	38	12	9	39	1.77
62393--62567	60	2.9	58	72	14	151	40	8	10	40	1.70
62727--62771	16	2.9	16	90	3	65	17	6	60	15	1.56

Tables:   1

The End!