genome.fa.s4015.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004015.1 Hibiscus syriacus cultivar Beakdansim tig00008767_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64629

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3263--3345	24	3.5	24	81	3	87	45	16	14	22	1.84
8377--8481	52	2.0	52	94	0	183	42	14	23	19	1.87
8971--9821	100	8.6	100	78	6	743	42	15	10	31	1.81
8972--9779	199	4.1	196	76	8	590	42	15	10	31	1.81
8850--9734	294	3.0	294	81	7	997	42	16	9	31	1.80
8845--9779	299	3.1	293	80	8	993	42	16	9	31	1.80
13927--13966	20	2.0	20	90	0	62	25	32	27	15	1.95
18344--18384	15	2.8	15	89	10	59	19	7	14	58	1.59
18432--18462	14	2.2	14	100	0	62	12	32	6	48	1.67
18546--18739	87	2.2	86	87	3	282	36	10	8	45	1.68
23956--24009	14	3.8	14	85	2	72	22	20	25	31	1.98
23952--24006	28	2.0	29	89	7	87	25	18	25	30	1.98
24759--24806	21	2.3	21	96	0	87	50	6	16	27	1.69
25574--25650	32	2.5	32	81	14	90	50	0	2	46	1.15
25598--25644	22	2.1	23	88	4	69	53	0	2	44	1.12
25606--25649	22	2.0	22	82	8	54	54	0	2	43	1.12
26177--26217	17	2.3	18	91	4	66	29	26	9	34	1.88
26772--26887	39	3.0	39	77	5	117	33	20	21	24	1.97
26823--26945	39	3.1	39	81	4	131	30	21	23	24	1.99
26772--26945	78	2.2	79	80	4	181	32	20	22	25	1.98
27911--27964	3	17.0	3	85	11	72	33	1	0	64	1.04
28346--28388	22	2.0	22	82	17	54	72	2	16	9	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35878--36511	54	11.8	54	86	2	790	31	10	18	39	1.85
42403--42568	39	4.2	39	87	1	233	33	24	21	20	1.97
43787--44635	55	15.5	54	82	4	895	36	15	17	30	1.91
43764--44633	109	7.9	110	84	2	955	36	15	17	30	1.91
43764--44635	164	5.3	164	82	3	943	36	15	17	30	1.91
50796--50899	51	2.0	52	83	5	129	36	18	20	25	1.94
50831--51532	55	12.8	55	88	0	985	34	17	18	29	1.94
52183--52226	20	2.1	21	83	4	54	45	29	2	22	1.65
61565--61631	19	3.5	19	79	4	80	50	1	0	47	1.10
61569--61602	17	2.0	17	94	0	59	50	0	0	50	1.00
61567--61604	2	19.5	2	89	5	60	50	0	0	50	1.00
61593--61641	26	2.0	24	84	8	62	48	2	4	44	1.33
61608--61966	36	9.5	37	78	11	284	47	3	6	42	1.46
61613--61964	73	4.6	73	76	15	313	47	3	6	42	1.46
61817--61891	28	2.6	28	91	6	114	44	2	6	46	1.43
61829--61993	37	5.2	29	80	13	111	44	3	7	44	1.48
62027--62081	11	4.5	12	76	17	51	20	1	0	78	0.85
62026--62079	25	2.2	24	83	12	74	20	3	0	75	0.95
62027--62081	6	9.0	6	75	16	51	20	1	0	78	0.85
62749--62802	23	2.3	23	83	0	72	18	35	33	12	1.89

Tables:   1

The End!