Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004016.1 Hibiscus syriacus cultivar Beakdansim tig00008768_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67341

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12836--12878
21
2.0
21
100
0
86
55
13
13
16
1.69
17341--17370
14
2.1
15
93
6
53
50
6
0
43
1.28
18787--18820
15
2.3
15
100
0
68
44
14
11
29
1.81
19959--20011
22
2.4
22
90
3
79
56
7
9
26
1.57
20096--20121
2
13.0
2
100
0
52
50
0
0
50
1.00
20791--20832
22
1.9
22
100
0
84
64
0
4
30
1.14
24003--24072
21
3.4
21
82
5
72
11
25
5
57
1.56
24572--24615
22
2.0
22
81
0
52
4
6
15
72
1.22
25147--25173
13
2.1
13
100
0
54
22
14
0
62
1.31
25280--25306
13
2.1
13
100
0
54
22
14
0
62
1.31
25095--25361
133
2.0
134
96
0
491
36
12
8
41
1.74
28056--28096
22
1.9
21
90
5
64
70
4
0
24
1.06
29256--29308
21
2.5
21
84
0
70
20
26
18
33
1.96
29298--29343
20
2.3
20
92
7
76
39
19
19
21
1.93
29398--29442
18
2.5
18
100
0
90
28
20
15
35
1.93
30224--30277
24
2.2
24
93
0
90
20
18
20
40
1.91
32757--32881
33
3.8
33
94
0
214
46
19
23
11
1.81
32735--32885
19
8.7
18
67
24
85
46
19
22
11
1.82
32881--32943
19
3.3
19
88
4
92
14
17
23
44
1.85
32891--32975
19
4.7
19
76
16
92
11
21
21
45
1.83
33082--33118
14
2.6
14
91
0
65
45
21
0
32
1.52
34467--34533
21
3.2
21
65
4
55
19
19
35
25
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34978--35091
19
5.8
19
79
5
102
46
21
20
12
1.82
35002--35091
20
4.6
19
83
4
81
45
22
21
11
1.82
35097--35198
19
5.3
19
88
3
132
8
20
21
49
1.76
35088--35192
39
2.7
39
85
4
131
10
19
22
47
1.79
35088--35199
58
1.9
58
83
3
145
11
19
21
47
1.81
35289--35664
94
4.1
94
93
3
595
46
17
12
22
1.82
37423--37477
20
2.8
20
97
2
103
10
21
20
47
1.80
38020--38113
20
4.7
20
84
2
134
21
21
20
37
1.95
38020--38117
41
2.4
41
89
1
144
22
20
19
37
1.94
38022--38137
61
1.9
61
83
0
151
25
20
19
33
1.97
38110--38155
21
2.2
21
84
0
56
39
17
26
17
1.91
51628--51697
35
2.0
35
100
0
140
42
8
11
37
1.72
53163--53551
185
2.1
186
92
2
653
41
3
8
46
1.51
60723--60875
24
6.4
24
99
0
297
29
24
7
38
1.83

Tables:   1

The End!