genome.fa.s4017.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004017.1 Hibiscus syriacus cultivar Beakdansim tig00008769_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139741

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4780--4840	24	2.5	24	94	0	104	47	6	8	37	1.59
4885--4943	21	2.8	21	94	0	100	37	5	11	45	1.63
17866--17997	18	7.3	18	93	0	228	28	24	26	20	1.99
22323--22356	15	2.4	14	85	9	50	23	17	0	58	1.38
23882--23946	26	2.4	26	79	5	67	41	18	12	27	1.86
38651--38687	15	2.5	15	100	0	74	29	27	16	27	1.97
38765--39413	326	2.0	323	85	3	865	38	8	15	37	1.78
39688--39722	5	7.0	5	86	0	52	45	0	0	54	0.99
41775--41949	95	1.8	95	82	4	228	32	14	24	29	1.94
46050--46198	79	1.9	79	88	2	228	36	10	26	26	1.89
46163--46389	90	2.5	91	79	3	262	40	11	20	27	1.86
46175--46389	45	4.8	45	81	2	236	40	11	19	28	1.86
49292--49330	18	2.2	18	100	0	78	25	5	23	46	1.73
51759--52021	132	2.0	132	91	1	429	21	38	6	33	1.79
57150--57174	2	12.5	2	100	0	50	48	0	0	52	1.00
57174--57214	16	2.6	16	100	0	82	24	9	0	65	1.22
57298--57343	19	2.4	19	85	10	58	13	10	0	76	1.03
57318--57369	27	2.0	26	81	11	61	11	9	1	76	1.09
60158--60418	95	2.7	95	90	3	389	32	17	18	31	1.94
61369--61745	151	2.5	152	89	1	569	36	22	15	25	1.94
61817--62278	121	3.8	121	85	3	599	34	25	16	22	1.95
61817--62278	242	1.9	243	86	4	664	34	25	16	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62296--62599	84	3.8	84	79	13	331	34	25	16	23	1.95
64593--64639	19	2.3	21	85	7	62	12	10	0	76	1.02
64609--64673	33	2.0	34	81	6	80	16	6	3	73	1.16
70124--70148	2	12.5	2	100	0	50	48	0	0	52	1.00
70149--70177	13	2.1	14	93	6	51	72	0	0	27	0.85
73318--73373	18	3.2	18	75	14	55	25	0	0	75	0.81
73928--73981	16	3.4	17	73	19	53	35	0	1	62	1.06
75172--75332	64	2.5	64	81	3	191	32	18	22	25	1.97
75340--75377	20	1.9	20	94	0	67	31	18	23	26	1.97
76651--76720	34	2.1	32	86	5	95	22	30	15	31	1.95
77001--77045	21	2.1	21	95	0	81	28	26	20	24	1.99
77153--77182	15	2.0	15	100	0	60	13	26	33	26	1.93
77130--77203	36	2.0	38	89	5	116	13	27	37	21	1.91
77129--77209	21	4.1	21	74	19	75	12	27	39	20	1.89
77453--77496	23	2.0	22	86	13	63	47	0	18	34	1.49
77514--77550	17	2.1	18	85	14	51	45	2	16	35	1.61
77543--77579	2	18.5	2	100	0	74	51	0	0	48	1.00
77966--78010	23	2.0	23	86	0	63	24	24	22	28	1.99
81423--81521	45	2.2	45	81	3	110	36	19	19	25	1.95
81529--81591	20	2.9	22	81	15	78	31	17	22	28	1.96
82694--82731	2	18.5	2	94	5	67	50	0	2	47	1.15
83205--83272	23	3.0	22	80	8	73	20	23	25	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85049--85108	21	2.9	21	97	0	111	43	15	5	36	1.68
87445--87478	17	1.9	18	94	5	61	61	8	0	29	1.26
87936--87982	23	2.0	23	91	0	76	29	14	8	46	1.74
88191--88249	18	3.4	18	67	21	54	18	6	23	50	1.70
88187--88249	33	1.9	33	93	0	108	19	6	22	52	1.68
91193--91233	19	2.1	19	86	4	55	34	4	24	36	1.77
91126--91462	169	2.0	165	96	3	622	40	4	20	34	1.74
91489--91635	59	2.3	62	81	13	151	33	19	17	29	1.95
93205--93279	35	2.1	35	87	0	105	42	18	1	37	1.59
96291--96462	31	5.5	31	93	0	290	20	19	20	39	1.93
96954--96996	21	2.0	21	82	8	52	32	4	13	48	1.63
99505--99573	19	3.9	18	73	22	67	15	28	33	21	1.95
100385--100633	31	8.0	31	91	0	392	19	18	22	39	1.93
101114--101156	21	2.0	21	86	8	61	32	2	13	51	1.54
102924--102991	21	3.1	22	89	6	102	32	0	17	50	1.47
103305--103450	75	1.9	75	94	0	256	21	17	13	47	1.81
105353--105410	29	2.0	29	100	0	116	31	24	17	27	1.97
116252--116301	24	2.0	24	84	3	64	50	0	0	50	1.00
116253--116303	23	2.2	24	82	3	59	52	0	0	47	1.00
116404--116433	15	2.0	15	93	0	51	83	0	3	13	0.77
119590--119644	20	2.8	19	83	8	65	21	30	20	27	1.98
126055--126107	11	5.3	9	75	20	52	84	11	3	0	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126061--126107	11	4.4	11	78	5	60	85	10	4	0	0.74
126055--126107	21	2.6	20	85	11	72	84	11	3	0	0.73
126072--126115	19	2.3	19	92	4	70	79	11	6	2	1.01

Tables:   1

The End!