genome.fa.s4018.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004018.1 Hibiscus syriacus cultivar Beakdansim tig00008775_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67986

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
427--496	29	2.3	31	87	4	99	31	4	8	55	1.49
1651--1691	20	1.9	22	85	14	59	53	2	4	39	1.35
3741--3779	2	20.5	2	89	10	64	48	0	0	51	1.00
3741--3779	11	3.4	12	89	10	64	48	0	0	51	1.00
3742--3779	13	2.9	13	96	0	67	50	0	0	50	1.00
3741--3779	15	2.6	15	95	0	69	48	0	0	51	1.00
8065--8112	19	2.5	19	89	0	78	16	27	33	22	1.96
12252--12317	31	2.2	30	83	5	80	31	7	1	59	1.35
12291--12325	18	1.9	18	94	0	61	42	8	0	48	1.33
12297--12341	18	2.4	18	85	10	56	42	8	0	48	1.34
12411--12486	31	2.5	31	79	16	86	55	0	2	42	1.14
12411--12538	28	4.6	28	73	13	88	54	0	3	41	1.19
12461--12499	21	1.9	20	94	5	69	61	0	0	38	0.96
12528--12572	18	2.4	18	85	7	54	33	2	13	51	1.53
13388--13614	21	11.0	21	74	12	184	21	19	23	34	1.96
13394--13545	63	2.5	61	92	2	250	20	18	26	34	1.96
13497--13607	19	5.5	19	68	16	71	21	20	20	36	1.95
14215--14247	6	5.7	6	92	7	59	0	18	48	33	1.48
14343--14411	19	3.5	19	71	13	59	37	23	18	20	1.94
14339--14430	40	2.3	42	90	5	145	35	23	19	20	1.95
14363--14436	21	3.6	21	78	7	80	35	25	20	18	1.96
14493--14547	21	2.6	21	94	0	92	30	25	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14392--14570	90	2.0	89	83	8	229	32	17	24	25	1.97
15814--15922	30	3.9	28	74	4	87	52	1	6	39	1.38
15797--16092	28	10.5	28	68	13	126	53	2	5	38	1.38
15918--15954	17	2.1	18	90	5	58	59	0	0	40	0.97
15907--15979	30	2.6	29	75	14	71	58	0	2	38	1.12
17604--17676	13	5.6	13	86	0	101	23	16	16	43	1.87
17607--17672	26	2.5	26	95	0	114	25	16	15	42	1.87
21015--21086	24	3.0	24	84	8	101	20	12	16	50	1.78
21246--21296	2	25.5	2	100	0	102	49	0	0	50	1.00
21913--21964	27	1.9	27	84	0	68	36	15	11	36	1.84
22126--22165	3	13.3	3	100	0	80	67	0	0	32	0.91
22507--22566	13	4.6	13	82	0	75	21	15	16	46	1.83
22505--22566	26	2.4	26	88	0	88	24	14	16	45	1.84
23121--23177	21	2.7	21	83	0	78	29	22	19	28	1.98
23167--23281	21	5.5	21	88	0	158	21	27	20	29	1.98
23945--24008	28	2.3	28	97	0	119	32	20	20	26	1.97
24027--24115	21	4.2	21	83	0	115	33	16	23	25	1.96
31147--31191	23	1.9	23	86	4	63	64	4	17	13	1.44
32751--32794	19	2.3	19	80	11	54	40	9	0	50	1.34
33229--33259	3	10.3	3	100	0	62	35	0	0	64	0.94
34336--34391	27	2.0	27	86	10	76	17	10	8	62	1.52
36743--41091	4	1095.5	4	98	1	8458	49	25	0	24	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41366--41643	153	1.8	153	84	2	378	31	15	12	40	1.85
41815--41926	36	3.1	35	82	6	134	31	18	10	39	1.85
42230--42287	30	1.9	31	85	3	82	32	13	8	44	1.75
43159--43255	28	3.4	28	83	9	97	25	18	13	42	1.87
43176--43255	28	2.9	28	88	3	108	23	16	15	45	1.85
43406--43482	40	1.9	40	83	0	100	22	35	19	23	1.96
43261--43621	134	2.7	134	88	0	506	26	30	16	26	1.97
48852--48877	2	13.0	2	100	0	52	50	0	0	50	1.00
54449--54488	20	2.0	20	95	0	71	32	0	12	55	1.38
55246--55324	22	3.4	22	67	16	68	40	8	5	45	1.57
55219--55321	49	2.1	49	98	0	197	42	10	4	41	1.61
55363--55571	92	2.3	92	87	1	294	35	24	5	34	1.78
58293--58376	3	27.7	3	83	11	109	65	0	0	34	0.93
58294--58371	27	2.9	27	90	1	120	66	0	0	33	0.92
58727--59258	116	4.7	116	92	2	780	29	19	13	36	1.91
58727--59433	232	3.1	230	84	8	812	28	19	14	37	1.91
60208--60430	114	2.0	114	93	0	383	30	20	15	34	1.94
60724--60772	16	2.8	17	81	12	64	48	6	8	36	1.58
61125--61173	11	4.5	11	80	12	57	0	16	0	83	0.64
61127--61175	21	2.3	21	85	0	71	0	16	0	83	0.64
61135--61173	13	3.1	13	85	3	53	0	12	0	87	0.55

Tables:   1

The End!