Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004019.1 Hibiscus syriacus cultivar Beakdansim tig00008779_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 225756
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 2
Found at i:8392 original size:11 final size:11
Alignment explanation
Indices: 8376--8402 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
8366 ATGTTGAATG
8376 AAAAAAAAACA
1 AAAAAAAAACA
8387 AAAAAAAAACA
1 AAAAAAAAACA
8398 AAAAA
1 AAAAA
8403 CAACTGTTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAAAAACA
Found at i:15490 original size:12 final size:11
Alignment explanation
Indices: 15464--15512 Score: 53
Period size: 12 Copynumber: 4.3 Consensus size: 11
15454 CATTTTTTTT
*
15464 AAAAGAAAGTA
1 AAAAGAAAATA
*
15475 AAAACTAAAATA
1 AAAA-GAAAATA
15487 AAAAGAAAATTA
1 AAAAGAAAA-TA
*
15499 AAAGGAAAATA
1 AAAAGAAAATA
15510 AAA
1 AAA
15513 CTTTTATAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
11 13 0.41
12 19 0.59
ACGTcount: A:0.76, C:0.02, G:0.10, T:0.12
Consensus pattern (11 bp):
AAAAGAAAATA
Found at i:15492 original size:23 final size:23
Alignment explanation
Indices: 15464--15512 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
15454 CATTTTTTTT
* *
15464 AAAAGAAAGTAAAAACTAAAATA
1 AAAAGAAAATAAAAACGAAAATA
* *
15487 AAAAGAAAATTAAAAGGAAAATA
1 AAAAGAAAATAAAAACGAAAATA
15510 AAA
1 AAA
15513 CTTTTATAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.76, C:0.02, G:0.10, T:0.12
Consensus pattern (23 bp):
AAAAGAAAATAAAAACGAAAATA
Found at i:22110 original size:15 final size:17
Alignment explanation
Indices: 22090--22126 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
22080 AAAAATAAAT
22090 TATTTTT-TATTTATC-
1 TATTTTTATATTTATCA
*
22105 TATTTTTATTTTTATCA
1 TATTTTTATATTTATCA
22122 TATTT
1 TATTT
22127 CAGTTTTGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 7 0.37
16 7 0.37
17 5 0.26
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (17 bp):
TATTTTTATATTTATCA
Found at i:23566 original size:20 final size:20
Alignment explanation
Indices: 23541--23609 Score: 70
Period size: 20 Copynumber: 3.4 Consensus size: 20
23531 AAAAAATGAT
23541 TGAACAAAGGAAACATGAAA
1 TGAACAAAGGAAACATGAAA
* *
23561 TGAACAAAATGAAA-A-GCATAT
1 TGAAC-AAAGGAAACATG-A-AA
*
23582 TGAGCAAAGGAAACATGAAA
1 TGAACAAAGGAAACATGAAA
23602 TGAACAAA
1 TGAACAAA
23610 ATGAAAAGCA
Statistics
Matches: 38, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
19 1 0.03
20 22 0.58
21 14 0.37
22 1 0.03
ACGTcount: A:0.58, C:0.10, G:0.19, T:0.13
Consensus pattern (20 bp):
TGAACAAAGGAAACATGAAA
Found at i:23590 original size:41 final size:41
Alignment explanation
Indices: 23539--23621 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
23529 AAAAAAAATG
23539 ATTGAACAAAGGAAACATGAAATGAACAAAATGAAAAGCAT
1 ATTGAACAAAGGAAACATGAAATGAACAAAATGAAAAGCAT
*
23580 ATTGAGCAAAGGAAACATGAAATGAACAAAATGAAAAGCAT
1 ATTGAACAAAGGAAACATGAAATGAACAAAATGAAAAGCAT
23621 A
1 A
23622 CAGATCAAGT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.58, C:0.10, G:0.18, T:0.14
Consensus pattern (41 bp):
ATTGAACAAAGGAAACATGAAATGAACAAAATGAAAAGCAT
Found at i:24730 original size:29 final size:29
Alignment explanation
Indices: 24684--24774 Score: 101
Period size: 29 Copynumber: 3.1 Consensus size: 29
24674 ATACACCCCT
*
24684 AGATTAAATCCCCTTCCTGATTCTACATG
1 AGATTAAATCCCCGTCCTGATTCTACATG
* *
24713 AGATTAAATCCCCGTCCTAATTCTATATG
1 AGATTAAATCCCCGTCCTGATTCTACATG
* * * * * *
24742 GGATTAAATCTCTGTCATGTTTCTGCATG
1 AGATTAAATCCCCGTCCTGATTCTACATG
24771 AGAT
1 AGAT
24775 CATATCTCAG
Statistics
Matches: 50, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.36
Consensus pattern (29 bp):
AGATTAAATCCCCGTCCTGATTCTACATG
Found at i:27796 original size:20 final size:20
Alignment explanation
Indices: 27771--27813 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
27761 TTGAAGTATG
*
27771 GAGGCTTGTTGATCGGTTGT
1 GAGGCTTGTTGATCGATTGT
27791 GAGGCTTGTTGATCGATTGT
1 GAGGCTTGTTGATCGATTGT
27811 GAG
1 GAG
27814 TCTTCCATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.14, C:0.09, G:0.40, T:0.37
Consensus pattern (20 bp):
GAGGCTTGTTGATCGATTGT
Found at i:28543 original size:21 final size:22
Alignment explanation
Indices: 28517--28557 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
28507 CCAGGACATA
28517 GAGTATCGATAC-TCTTTTAAT
1 GAGTATCGATACTTCTTTTAAT
*
28538 GAGTATCGGTACTTCTTTTA
1 GAGTATCGATACTTCTTTTA
28558 TAATTTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.24, C:0.15, G:0.17, T:0.44
Consensus pattern (22 bp):
GAGTATCGATACTTCTTTTAAT
Found at i:30601 original size:29 final size:29
Alignment explanation
Indices: 30559--30644 Score: 154
Period size: 29 Copynumber: 3.0 Consensus size: 29
30549 AGTGTTGGCC
30559 GTAGGTCGCCATGCACTCCGGGCGACCTT
1 GTAGGTCGCCATGCACTCCGGGCGACCTT
*
30588 GTAGGTCGCCATGCACTCCTGGCGACCTT
1 GTAGGTCGCCATGCACTCCGGGCGACCTT
*
30617 GTAGGTCGCAATGCACTCCGGGCGACCT
1 GTAGGTCGCCATGCACTCCGGGCGACCT
30645 ACCCTTGCTC
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.15, C:0.34, G:0.30, T:0.21
Consensus pattern (29 bp):
GTAGGTCGCCATGCACTCCGGGCGACCTT
Found at i:30773 original size:33 final size:33
Alignment explanation
Indices: 30736--30829 Score: 118
Period size: 33 Copynumber: 2.8 Consensus size: 33
30726 GCGACTTACC
*
30736 CTCGCTCGGCTT-CCCTCGGATTCCCTCGCATAG
1 CTCGCTCGG-TTGCCCTCGGATGCCCTCGCATAG
*
30769 CTCGCTCGGTTGTCCTCGGATGCCCTCGCATAG
1 CTCGCTCGGTTGCCCTCGGATGCCCTCGCATAG
* * * *
30802 CTCGTTCGGATGGCCTCGGATGGCCTCG
1 CTCGCTCGGTTGCCCTCGGATGCCCTCG
30830 GTCGGATGGC
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
32 2 0.04
33 52 0.96
ACGTcount: A:0.09, C:0.37, G:0.28, T:0.27
Consensus pattern (33 bp):
CTCGCTCGGTTGCCCTCGGATGCCCTCGCATAG
Found at i:30834 original size:24 final size:23
Alignment explanation
Indices: 30784--30847 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 23
30774 TCGGTTGTCC
* * * *
30784 TCGGATGCCCTCGCATAGCTCGT
1 TCGGATGGCCTCGGATGGCTCGG
30807 TCGGATGGCCTCGGATGGCCTCGG
1 TCGGATGGCCTCGGATGG-CTCGG
*
30831 TCGGATGGCCTCAGATG
1 TCGGATGGCCTCGGATG
30848 CCCAGCGTGT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
23 15 0.43
24 20 0.57
ACGTcount: A:0.12, C:0.30, G:0.34, T:0.23
Consensus pattern (23 bp):
TCGGATGGCCTCGGATGGCTCGG
Found at i:30924 original size:29 final size:29
Alignment explanation
Indices: 30887--30944 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
30877 GCAATCTCTT
*
30887 GTAGCTCGCCGGGAAGACATGGCGACCTA
1 GTAGCTCGCCCGGAAGACATGGCGACCTA
* *
30916 GTAGGTCGCCCGGAAGGCATGGCGACCTA
1 GTAGCTCGCCCGGAAGACATGGCGACCTA
30945 CGGCCAACAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.22, C:0.28, G:0.36, T:0.14
Consensus pattern (29 bp):
GTAGCTCGCCCGGAAGACATGGCGACCTA
Found at i:34123 original size:34 final size:34
Alignment explanation
Indices: 34080--34147 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
34070 ATATATAATA
34080 TTTTATATTAATTATACATATAATATTTTATATT
1 TTTTATATTAATTATACATATAATATTTTATATT
*
34114 TTTTATATTAATTATATATATAATATTTTATATT
1 TTTTATATTAATTATACATATAATATTTTATATT
34148 AATTATATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.60
Consensus pattern (34 bp):
TTTTATATTAATTATACATATAATATTTTATATT
Found at i:34130 original size:25 final size:26
Alignment explanation
Indices: 34114--34162 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
34104 ATTTTATATT
34114 TTTTATATTAATTATA-TATATAATA
1 TTTTATATTAATTATATTATATAATA
*
34139 TTTTATATTAATTATATAATATAA
1 TTTTATATTAATTATATTATATAA
34163 ACCCTAAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (26 bp):
TTTTATATTAATTATATTATATAATA
Found at i:34155 original size:34 final size:32
Alignment explanation
Indices: 34060--34147 Score: 122
Period size: 34 Copynumber: 2.7 Consensus size: 32
34050 CGTCCCGATC
* *
34060 ATATATATATATATATAATATTTTATATTAATT
1 ATATATATA-ATATTTTATATTTTATATTAATT
*
34093 ATACATATAATATTTTATATTTTTTATATTAATT
1 ATATATATAATATTTTATA--TTTTATATTAATT
34127 ATATATATAATATTTTATATT
1 ATATATATAATATTTTATATT
34148 AATTATATAA
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
32 10 0.20
33 8 0.16
34 31 0.63
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (32 bp):
ATATATATAATATTTTATATTTTATATTAATT
Found at i:35550 original size:13 final size:13
Alignment explanation
Indices: 35513--35546 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
35503 TAAATTGAAC
35513 TAAATTTTATTTTA
1 TAAATTTTA-TTTA
35527 TAAATTTTATTTA
1 TAAATTTTATTTA
35540 -AAATTTT
1 TAAATTTT
35547 TATTATATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 7 0.35
13 4 0.20
14 9 0.45
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TAAATTTTATTTA
Found at i:35707 original size:19 final size:19
Alignment explanation
Indices: 35666--35707 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
35656 ATGACCAACA
* *
35666 AATTCGCAACACGATCTCG
1 AATTCGCAACACGAACTCC
*
35685 AATTCGCAACGCGAACTCC
1 AATTCGCAACACGAACTCC
35704 AATT
1 AATT
35708 TCGTAACTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.31, G:0.14, T:0.21
Consensus pattern (19 bp):
AATTCGCAACACGAACTCC
Found at i:35770 original size:41 final size:40
Alignment explanation
Indices: 35668--35836 Score: 137
Period size: 41 Copynumber: 4.2 Consensus size: 40
35658 GACCAACAAA
* * * * * *
35668 TTCGCAACACGATCTC-GAATTCGCAACGCGAACTCCAAT
1 TTCGCAACTCGATTTCTGAATTCGCAACACAAATTTCAAT
* ** *
35707 TTCGTAACTC-AGTTTCCAAATTCGCAACACTAAATTTCAAA
1 TTCGCAACTCGA-TTTCTGAATTCGCAACAC-AAATTTCAAT
* * ***
35748 TTCGCAACTCGATTTCTGAATTCGCAACGCGAATTTTTGTT
1 TTCGCAACTCGATTTCTGAATTCGCAACAC-AAATTTCAAT
*
35789 TTCGCAACTCGATTT-TCGAATTCGCAACACAAATTTTAAT
1 TTCGCAACTCGATTTCT-GAATTCGCAACACAAATTTCAAT
35829 TTCGCAAC
1 TTCGCAAC
35837 AGGTTTTAGT
Statistics
Matches: 102, Mismatches: 23, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
38 1 0.01
39 11 0.11
40 27 0.26
41 62 0.61
42 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.31
Consensus pattern (40 bp):
TTCGCAACTCGATTTCTGAATTCGCAACACAAATTTCAAT
Found at i:35771 original size:20 final size:19
Alignment explanation
Indices: 35746--35816 Score: 79
Period size: 20 Copynumber: 3.5 Consensus size: 19
35736 CTAAATTTCA
35746 AATTCGCAACTCGATTTCTG
1 AATTCGCAACTCGATTT-TG
*
35766 AATTCGCAACGCGAATTTTTG
1 AATTCGCAACTCG-A-TTTTG
**
35787 TTTTCGCAACTCGATTTTCG
1 AATTCGCAACTCGATTTT-G
35807 AATTCGCAAC
1 AATTCGCAAC
35817 ACAAATTTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
19 4 0.10
20 22 0.52
21 13 0.31
22 3 0.07
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.35
Consensus pattern (19 bp):
AATTCGCAACTCGATTTTG
Found at i:35832 original size:20 final size:20
Alignment explanation
Indices: 35809--35860 Score: 63
Period size: 18 Copynumber: 2.7 Consensus size: 20
35799 GATTTTCGAA
35809 TTCGCAACACAAATTTTAAT
1 TTCGCAACACAAATTTTAAT
** *
35829 TTCGC-A-ACAGGTTTTAGT
1 TTCGCAACACAAATTTTAAT
35847 TTCGCAACACAAAT
1 TTCGCAACACAAAT
35861 GTTTTGAGTA
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
18 14 0.56
19 2 0.08
20 9 0.36
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.33
Consensus pattern (20 bp):
TTCGCAACACAAATTTTAAT
Found at i:36645 original size:12 final size:12
Alignment explanation
Indices: 36624--36657 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
36614 ACCACATTTC
*
36624 CAATACCAAACA
1 CAATATCAAACA
36636 CAATATCAAACA
1 CAATATCAAACA
*
36648 CAATCTCAAA
1 CAATATCAAA
36658 ACCCACACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.56, C:0.29, G:0.00, T:0.15
Consensus pattern (12 bp):
CAATATCAAACA
Found at i:39103 original size:18 final size:18
Alignment explanation
Indices: 39080--39115 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
39070 AAGTAAAAGG
*
39080 AAATCAAAATCGCAATCA
1 AAATCAAAATCCCAATCA
39098 AAATCAAAATCCCAATCA
1 AAATCAAAATCCCAATCA
39116 CAACCGGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.56, C:0.25, G:0.03, T:0.17
Consensus pattern (18 bp):
AAATCAAAATCCCAATCA
Found at i:39552 original size:14 final size:14
Alignment explanation
Indices: 39533--39569 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
39523 CATCAATTAA
39533 ACAAATCAACTTTT
1 ACAAATCAACTTTT
39547 ACAAATCAACTTTT
1 ACAAATCAACTTTT
39561 ACAAATCAA
1 ACAAATCAA
39570 TTAAACAAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:39605 original size:78 final size:78
Alignment explanation
Indices: 39469--39633 Score: 285
Period size: 78 Copynumber: 2.1 Consensus size: 78
39459 ATTTAAAACA
39469 ACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATAAGAATTATTTACACATCAATTAAA
1 ACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATAAGAATTATTTACACATCAATTAAA
39534 CAAATCAACTTTT
66 CAAATCAACTTTT
*** * *
39547 ACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATAATTCTTATTTCCTCATCAATTAAA
1 ACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATAAGAATTATTTACACATCAATTAAA
39612 CAAATCAACTTTT
66 CAAATCAACTTTT
39625 ACAAATCAA
1 ACAAATCAA
39634 TTAAAGAAGC
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
78 82 1.00
ACGTcount: A:0.51, C:0.18, G:0.02, T:0.29
Consensus pattern (78 bp):
ACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATAAGAATTATTTACACATCAATTAAA
CAAATCAACTTTT
Found at i:41065 original size:21 final size:21
Alignment explanation
Indices: 41003--41068 Score: 96
Period size: 21 Copynumber: 3.1 Consensus size: 21
40993 GAACAGTGGG
* *
41003 AGGGACCTCTTGAACGATGAC
1 AGGGGCCTCTTGAACGATGAT
* *
41024 AGGGGCCTTTTGAAGGATGAT
1 AGGGGCCTCTTGAACGATGAT
41045 AGGGGCCTCTTGAACGATGAT
1 AGGGGCCTCTTGAACGATGAT
41066 AGG
1 AGG
41069 TGAATCGGGC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.26, C:0.17, G:0.35, T:0.23
Consensus pattern (21 bp):
AGGGGCCTCTTGAACGATGAT
Found at i:41495 original size:21 final size:21
Alignment explanation
Indices: 41468--41520 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
41458 TGCACCATTG
*
41468 TCATCACGTAAAGTACCGACC
1 TCATCACGTAAAGCACCGACC
* * **
41489 TCCTCACGCAAAGCATTGACC
1 TCATCACGTAAAGCACCGACC
41510 TCATCACGTAA
1 TCATCACGTAA
41521 CTCCCCTAAC
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.32, C:0.34, G:0.13, T:0.21
Consensus pattern (21 bp):
TCATCACGTAAAGCACCGACC
Found at i:43609 original size:20 final size:22
Alignment explanation
Indices: 43584--43632 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
43574 TCTTAGAGAT
43584 GGAGAT-AG-ACGGATTTCGCC
1 GGAGATGAGAACGGATTTCGCC
* *
43604 GGAGATGAGAATGGATTTCGTC
1 GGAGATGAGAACGGATTTCGCC
*
43626 AGAGATG
1 GGAGATG
43633 GGGATGGATG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 6 0.25
21 2 0.08
22 16 0.67
ACGTcount: A:0.29, C:0.12, G:0.37, T:0.22
Consensus pattern (22 bp):
GGAGATGAGAACGGATTTCGCC
Found at i:43621 original size:22 final size:22
Alignment explanation
Indices: 43594--43641 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
43584 GGAGATAGAC
*
43594 GGATTTCGCCGGAGATGAGAAT
1 GGATTTCGCCAGAGATGAGAAT
* * *
43616 GGATTTCGTCAGAGATGGGGAT
1 GGATTTCGCCAGAGATGAGAAT
43638 GGAT
1 GGAT
43642 GTCGTCGTAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.25, C:0.10, G:0.40, T:0.25
Consensus pattern (22 bp):
GGATTTCGCCAGAGATGAGAAT
Found at i:43646 original size:22 final size:22
Alignment explanation
Indices: 43605--43647 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
43595 GATTTCGCCG
*
43605 GAGATGAGAATGGATTTCGTCA
1 GAGATGAGAATGGATGTCGTCA
* *
43627 GAGATGGGGATGGATGTCGTC
1 GAGATGAGAATGGATGTCGTC
43648 GTAGAGAGTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.26, C:0.09, G:0.40, T:0.26
Consensus pattern (22 bp):
GAGATGAGAATGGATGTCGTCA
Found at i:47465 original size:21 final size:21
Alignment explanation
Indices: 47439--47482 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
47429 ATTCTGGGCT
* *
47439 AGGGGAATCGGTACCCATTCA
1 AGGGGAACCGATACCCATTCA
*
47460 AGGGGAACCGATACCCCTTCA
1 AGGGGAACCGATACCCATTCA
47481 AG
1 AG
47483 CGAATAAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.30, C:0.27, G:0.27, T:0.16
Consensus pattern (21 bp):
AGGGGAACCGATACCCATTCA
Found at i:47554 original size:23 final size:22
Alignment explanation
Indices: 47510--47554 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
47500 AATATCATGG
*
47510 GGGAACCGATACCCCCACAGGA
1 GGGAACCGATACCCCCAAAGGA
*
47532 GGGAACCGATTCCCCCTAAAGGA
1 GGGAACCGATACCCCC-AAAGGA
47555 AAATTGTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.31, C:0.33, G:0.27, T:0.09
Consensus pattern (22 bp):
GGGAACCGATACCCCCAAAGGA
Found at i:49171 original size:23 final size:23
Alignment explanation
Indices: 49141--49198 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
49131 TATTATATGG
49141 CACTACGGTGCAATTCTACGTGA
1 CACTACGGTGCAATTCTACGTGA
*
49164 CACTACGGTGCAATTCTACGTGG
1 CACTACGGTGCAATTCTACGTGA
*
49187 CACTTCGGTGCA
1 CACTACGGTGCA
49199 TTTATATGAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (23 bp):
CACTACGGTGCAATTCTACGTGA
Found at i:51293 original size:23 final size:24
Alignment explanation
Indices: 51233--51294 Score: 58
Period size: 23 Copynumber: 2.7 Consensus size: 24
51223 TCAGAGATGA
* *
51233 GTATAAATAATAAGAAAAGAGTAT
1 GTATATATTATAAGAAAAGAGTAT
*
51257 GTGTATATTA-AAGAAAAGA-TAT
1 GTATATATTATAAGAAAAGAGTAT
*
51279 G-ATATGTGTATAAGAA
1 GTATATAT-TATAAGAA
51295 GATTTTGTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
21 4 0.13
22 6 0.19
23 14 0.45
24 7 0.23
ACGTcount: A:0.52, C:0.00, G:0.19, T:0.29
Consensus pattern (24 bp):
GTATATATTATAAGAAAAGAGTAT
Found at i:54099 original size:21 final size:21
Alignment explanation
Indices: 54075--54119 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
54065 TTTTGTTCGT
* *
54075 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
54096 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
54117 TTG
1 TTG
54120 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:56905 original size:16 final size:16
Alignment explanation
Indices: 56886--56938 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
56876 CCATAACCCC
56886 TATCACACATATATCA
1 TATCACACATATATCA
** *
56902 TATCATGCATACATCA
1 TATCACACATATATCA
*
56918 TATCACAAATCATATACA
1 TATCACACAT-ATAT-CA
56936 TAT
1 TAT
56939 ATCACATACA
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
16 20 0.71
17 3 0.11
18 5 0.18
ACGTcount: A:0.43, C:0.23, G:0.02, T:0.32
Consensus pattern (16 bp):
TATCACACATATATCA
Found at i:57137 original size:23 final size:23
Alignment explanation
Indices: 57111--57179 Score: 93
Period size: 23 Copynumber: 3.0 Consensus size: 23
57101 CACCACAGCT
*
57111 CGTATAATTGCACCGAAGTGCCA
1 CGTAGAATTGCACCGAAGTGCCA
* **
57134 CGTAGAATTGCACCGGAGTGCTG
1 CGTAGAATTGCACCGAAGTGCCA
*
57157 CGTAGAATTGCACCGTAGTGCCA
1 CGTAGAATTGCACCGAAGTGCCA
57180 TATAATAATG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.26, C:0.25, G:0.28, T:0.22
Consensus pattern (23 bp):
CGTAGAATTGCACCGAAGTGCCA
Found at i:57358 original size:103 final size:103
Alignment explanation
Indices: 57195--57406 Score: 361
Period size: 103 Copynumber: 2.1 Consensus size: 103
57185 TAATGTCCAT
* * * * *
57195 AAGGACTACATATCATTCCTTAAGAATCATATATATATACTAGGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATCCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
*
57260 GACTTCACACATGTTCCAAAGAATATATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATAAATATATGTCCCG
*
57298 AGGGACCACATATCATCCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATCCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
57363 GACTTCACACATGTTCCAAAGAATAAATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATAAATATATGTCCCG
57401 AAGGAC
1 AAGGAC
57407 TGCGTAGACC
Statistics
Matches: 101, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
103 101 1.00
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (103 bp):
AAGGACCACATATCATCCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
GACTTCACACATGTTCCAAAGAATAAATATATGTCCCG
Found at i:61465 original size:23 final size:24
Alignment explanation
Indices: 61405--61466 Score: 58
Period size: 23 Copynumber: 2.7 Consensus size: 24
61395 TCAGAGATGA
* *
61405 GTATAAATGATAAGAAAAGAGTAT
1 GTATATATTATAAGAAAAGAGTAT
*
61429 GTGTATATTA-AAGAAAAGA-TAT
1 GTATATATTATAAGAAAAGAGTAT
*
61451 G-ATATGTGTATAAGAA
1 GTATATAT-TATAAGAA
61467 GATTTTGTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
21 4 0.13
22 6 0.19
23 14 0.45
24 7 0.23
ACGTcount: A:0.50, C:0.00, G:0.21, T:0.29
Consensus pattern (24 bp):
GTATATATTATAAGAAAAGAGTAT
Found at i:63448 original size:23 final size:23
Alignment explanation
Indices: 63389--63438 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
63379 ATTATTATAT
*
63389 GGCACTACGGTGCAATTCTACGC
1 GGCATTACGGTGCAATTCTACGC
*
63412 GGCATTACGGTGCAATTCTACGT
1 GGCATTACGGTGCAATTCTACGC
63435 GGCA
1 GGCA
63439 GTTTGGTGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (23 bp):
GGCATTACGGTGCAATTCTACGC
Found at i:65694 original size:2 final size:2
Alignment explanation
Indices: 65687--65756 Score: 140
Period size: 2 Copynumber: 35.0 Consensus size: 2
65677 TATGAGATTA
65687 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
65729 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
65757 TAGGAGATAT
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 68 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:66757 original size:23 final size:23
Alignment explanation
Indices: 66695--66763 Score: 75
Period size: 23 Copynumber: 3.0 Consensus size: 23
66685 CATTATTATA
66695 TGGCACTACGGTGCAATTCTACG
1 TGGCACTACGGTGCAATTCTACG
* * * * *
66718 CGGCACTCCAGTACAATTCTAGG
1 TGGCACTACGGTGCAATTCTACG
* *
66741 TGGCACTTCGGTGCAATTATACG
1 TGGCACTACGGTGCAATTCTACG
66764 AGCTGTGGTG
Statistics
Matches: 35, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (23 bp):
TGGCACTACGGTGCAATTCTACG
Found at i:69125 original size:82 final size:83
Alignment explanation
Indices: 69033--69229 Score: 290
Period size: 82 Copynumber: 2.4 Consensus size: 83
69023 CCAAATAATG
**
69033 GTGGTGCATTATCATCTTCTACAACTTTTCATTGGTCATTCAATGCATAATTTAAACAAATTTT-
1 GTGGTGCATTATCATCTTCTACAACTTTTCAGAGGTCATTCAATGCATAATTTAAACAAATTTTA
* * *
69097 CAGAAAACAGGTGAGATA
66 AAAAAAACAGGTGAAATA
* * *
69115 GTGGTGCATTACCATCTTCTGCAACTTTTCAGAGGTCATTCAATGCATAATTTAAACAACTTTTA
1 GTGGTGCATTATCATCTTCTACAACTTTTCAGAGGTCATTCAATGCATAATTTAAACAAATTTTA
*
69180 AAAAAAACGGGTGAAATA
66 AAAAAAACAGGTGAAATA
69198 GTGGTGCATTATCATCTTC-AGCAACTTTTCAG
1 GTGGTGCATTATCATCTTCTA-CAACTTTTCAG
69230 TAATGTATCA
Statistics
Matches: 102, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
82 59 0.58
83 43 0.42
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (83 bp):
GTGGTGCATTATCATCTTCTACAACTTTTCAGAGGTCATTCAATGCATAATTTAAACAAATTTTA
AAAAAAACAGGTGAAATA
Found at i:69930 original size:29 final size:29
Alignment explanation
Indices: 69888--69946 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
69878 GAATGAGGAA
69888 TTAAAGAACTTAATCTTATCTCTGACAAG
1 TTAAAGAACTTAATCTTATCTCTGACAAG
69917 TTAAAGAACTTAATCTTATCTCTGACAAG
1 TTAAAGAACTTAATCTTATCTCTGACAAG
69946 T
1 T
69947 CTACTGATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.36
Consensus pattern (29 bp):
TTAAAGAACTTAATCTTATCTCTGACAAG
Found at i:71353 original size:15 final size:15
Alignment explanation
Indices: 71334--71377 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 15
71324 AATAAGTGAC
71334 ATTTTCATAAATATT
1 ATTTTCATAAATATT
* * *
71349 CTTTTGAGATAATATT
1 ATTTTCATA-AATATT
71365 ATTTTCATAAATA
1 ATTTTCATAAATA
71378 AAACCAACTT
Statistics
Matches: 22, Mismatches: 6, Indels: 2
0.73 0.20 0.07
Matches are distributed among these distances:
15 10 0.45
16 12 0.55
ACGTcount: A:0.39, C:0.07, G:0.05, T:0.50
Consensus pattern (15 bp):
ATTTTCATAAATATT
Found at i:71685 original size:14 final size:14
Alignment explanation
Indices: 71662--71694 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
71652 GCATTACTTA
*
71662 AAAATGAATAAATT
1 AAAATAAATAAATT
71676 AAAATAAATAAATT
1 AAAATAAATAAATT
71690 AAAAT
1 AAAAT
71695 GCATACTACC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (14 bp):
AAAATAAATAAATT
Found at i:73468 original size:20 final size:20
Alignment explanation
Indices: 73443--73519 Score: 145
Period size: 20 Copynumber: 3.9 Consensus size: 20
73433 GCGATTTTCC
73443 TAAATCGCAATGCGAATGCG
1 TAAATCGCAATGCGAATGCG
73463 TAAATCGCAATGCGAATGCG
1 TAAATCGCAATGCGAATGCG
*
73483 TAAATCGCAATGCGAATACG
1 TAAATCGCAATGCGAATGCG
73503 TAAATCGCAATGCGAAT
1 TAAATCGCAATGCGAAT
73520 CTGACTATCG
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 56 1.00
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.21
Consensus pattern (20 bp):
TAAATCGCAATGCGAATGCG
Found at i:73744 original size:22 final size:22
Alignment explanation
Indices: 73719--73784 Score: 105
Period size: 22 Copynumber: 3.0 Consensus size: 22
73709 GGCGACATCT
73719 GTCCCCATCTCCGACGAAATCA
1 GTCCCCATCTCCGACGAAATCA
* *
73741 GTCCCCATCTCCAACGATATCA
1 GTCCCCATCTCCGACGAAATCA
*
73763 GTCTCCATCTCCGACGAAATCA
1 GTCCCCATCTCCGACGAAATCA
73785 TTCACGGTCA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.27, C:0.39, G:0.12, T:0.21
Consensus pattern (22 bp):
GTCCCCATCTCCGACGAAATCA
Found at i:74175 original size:39 final size:40
Alignment explanation
Indices: 74121--74266 Score: 224
Period size: 40 Copynumber: 3.7 Consensus size: 40
74111 CGATTCTGTC
74121 GTTGCGATTTTCA-TTTCGCGTTGCGATAGTCATTTTCGT
1 GTTGCGATTTTCATTTTCGCGTTGCGATAGTCATTTTCGT
**
74160 GTTGCGATTTTCA-TTTCGCGTTGCGATAGTCAAATTCGT
1 GTTGCGATTTTCATTTTCGCGTTGCGATAGTCATTTTCGT
** *
74199 GTTGCGATAGTCATTTTCGTGTTGCGATAGTCATTTTCGT
1 GTTGCGATTTTCATTTTCGCGTTGCGATAGTCATTTTCGT
*
74239 GTTGCGATTTTCATTTTCGTGTTGCGAT
1 GTTGCGATTTTCATTTTCGCGTTGCGAT
74267 TTTAAGTTTC
Statistics
Matches: 97, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 48 0.49
40 49 0.51
ACGTcount: A:0.14, C:0.16, G:0.24, T:0.45
Consensus pattern (40 bp):
GTTGCGATTTTCATTTTCGCGTTGCGATAGTCATTTTCGT
Found at i:74269 original size:20 final size:20
Alignment explanation
Indices: 74121--74266 Score: 188
Period size: 20 Copynumber: 7.4 Consensus size: 20
74111 CGATTCTGTC
** *
74121 GTTGCGATTTTCA-TTTCGC
1 GTTGCGATAGTCATTTTCGT
74140 GTTGCGATAGTCATTTTCGT
1 GTTGCGATAGTCATTTTCGT
** *
74160 GTTGCGATTTTCA-TTTCGC
1 GTTGCGATAGTCATTTTCGT
**
74179 GTTGCGATAGTCAAATTCGT
1 GTTGCGATAGTCATTTTCGT
74199 GTTGCGATAGTCATTTTCGT
1 GTTGCGATAGTCATTTTCGT
74219 GTTGCGATAGTCATTTTCGT
1 GTTGCGATAGTCATTTTCGT
**
74239 GTTGCGATTTTCATTTTCGT
1 GTTGCGATAGTCATTTTCGT
74259 GTTGCGAT
1 GTTGCGAT
74267 TTTAAGTTTC
Statistics
Matches: 111, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
19 27 0.24
20 84 0.76
ACGTcount: A:0.14, C:0.16, G:0.24, T:0.45
Consensus pattern (20 bp):
GTTGCGATAGTCATTTTCGT
Found at i:76150 original size:20 final size:20
Alignment explanation
Indices: 76125--76237 Score: 91
Period size: 20 Copynumber: 5.2 Consensus size: 20
76115 TCAATTTGCA
76125 TATCGCAATGCGAAAATGAC
1 TATCGCAATGCGAAAATGAC
* *
76145 TATCGCAACGAGAAAATCGCAACAAC
1 TATCGCAATGCGAAAAT-G-----AC
* * *
76171 AAAATCGCAACGCAAAAATGAC
1 -TA-TCGCAATGCGAAAATGAC
76193 TATCGCAATGCGAAAATGAC
1 TATCGCAATGCGAAAATGAC
**
76213 TATCGCAATGCGAATTTGAC
1 TATCGCAATGCGAAAATGAC
76233 TATCG
1 TATCG
76238 TAACGAAAGA
Statistics
Matches: 75, Mismatches: 10, Indels: 16
0.74 0.10 0.16
Matches are distributed among these distances:
20 54 0.72
21 2 0.03
22 2 0.03
26 2 0.03
27 2 0.03
28 13 0.17
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.19
Consensus pattern (20 bp):
TATCGCAATGCGAAAATGAC
Found at i:76189 original size:14 final size:14
Alignment explanation
Indices: 76146--76187 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
76136 GAAAATGACT
*
76146 ATCGCAACGAGAAA
1 ATCGCAACGACAAA
*
76160 ATCGCAACAACAAA
1 ATCGCAACGACAAA
76174 ATCGCAACG-CAAA
1 ATCGCAACGACAAA
76187 A
1 A
76188 ATGACTATCG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
13 5 0.20
14 20 0.80
ACGTcount: A:0.52, C:0.26, G:0.14, T:0.07
Consensus pattern (14 bp):
ATCGCAACGACAAA
Found at i:76345 original size:40 final size:40
Alignment explanation
Indices: 76285--76453 Score: 189
Period size: 40 Copynumber: 4.2 Consensus size: 40
76275 GCGATTCTCT
*
76285 CGTTGCGATAGTCAAATT-CGCATTACGATAGTCATTTTCG
1 CGTTGCGATAGTC-AATTCCGCATTGCGATAGTCATTTTCG
* **
76325 CGTTACGATAGTCAAATT-CGCATTGCGATAGTCAAATTCG
1 CGTTGCGATAGTC-AATTCCGCATTGCGATAGTCATTTTCG
* * * *
76365 CATTGCGATAGTCATTTCCGCGTTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCAATTCCGCATTGCGATAGTCATTTTCG
* * ** *
76405 CGTTGCTATAGTCATTTCCGTGTTGCGATAGTCATTTTTG
1 CGTTGCGATAGTCAATTCCGCATTGCGATAGTCATTTTCG
76445 CGTTGCGAT
1 CGTTGCGAT
76454 TTTAAGTTTC
Statistics
Matches: 111, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 3 0.03
40 108 0.97
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (40 bp):
CGTTGCGATAGTCAATTCCGCATTGCGATAGTCATTTTCG
Found at i:76380 original size:60 final size:60
Alignment explanation
Indices: 76287--76453 Score: 212
Period size: 60 Copynumber: 2.8 Consensus size: 60
76277 GATTCTCTCG
* *
76287 TTGCGATAGTCAAATTCGCATTACGATAGTCATTTTCGCGTTACGATAGTCAAATT-CGCA
1 TTGCGATAGTCAAATTCGCATTGCGATAGTCATTTTCGCGTTGCGATAGTC-AATTCCGCA
* * *
76347 TTGCGATAGTCAAATTCGCATTGCGATAGTCATTTCCGCGTTGCGATAGTCATTTCCGCG
1 TTGCGATAGTCAAATTCGCATTGCGATAGTCATTTTCGCGTTGCGATAGTCAATTCCGCA
* * ** *
76407 TTGCTATAGTC-ATTTCCGTGTTGCGATAGTCATTTTTGCGTTGCGAT
1 TTGCGATAGTCAAATT-CGCATTGCGATAGTCATTTTCGCGTTGCGAT
76454 TTTAAGTTTC
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
59 6 0.06
60 88 0.94
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.37
Consensus pattern (60 bp):
TTGCGATAGTCAAATTCGCATTGCGATAGTCATTTTCGCGTTGCGATAGTCAATTCCGCA
Found at i:76390 original size:20 final size:19
Alignment explanation
Indices: 76285--76453 Score: 167
Period size: 20 Copynumber: 8.5 Consensus size: 19
76275 GCGATTCTCT
*
76285 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTC-ATTTCG
* *
76305 CATTACGATAGTCATTTTCG
1 CGTTGCGATAGTCA-TTTCG
* *
76325 CGTTACGATAGTCAAATTCG
1 CGTTGCGATAGTC-ATTTCG
* *
76345 CATTGCGATAGTCAAATTCG
1 CGTTGCGATAGTC-ATTTCG
*
76365 CATTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTT-CG
76385 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTT-CG
*
76405 CGTTGCTATAGTCATTTCCG
1 CGTTGCGATAGTCATTT-CG
* *
76425 TGTTGCGATAGTCATTTTTG
1 CGTTGCGATAGTCA-TTTCG
76445 CGTTGCGAT
1 CGTTGCGAT
76454 TTTAAGTTTC
Statistics
Matches: 131, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
19 4 0.03
20 123 0.94
21 4 0.03
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (19 bp):
CGTTGCGATAGTCATTTCG
Found at i:76991 original size:42 final size:42
Alignment explanation
Indices: 76932--77043 Score: 109
Period size: 42 Copynumber: 2.7 Consensus size: 42
76922 GCCTGACTCA
** * *
76932 CCTATCATCGTTCAAGAGGCCTCC-CCTATCGTTCAAGAGGCC
1 CCTATCATCCCTCAAGAGGCC-CCTCCCACCGTTCAAGAGGCC
*
76974 CCTATCATCCCTCAAGAGTCCCCTCCCACCGTTCAAGAGGCC
1 CCTATCATCCCTCAAGAGGCCCCTCCCACCGTTCAAGAGGCC
* * ** * *
77016 ACTGTCATCGTTGAAGAGGTCCCTCCCA
1 CCTATCATCCCTCAAGAGGCCCCTCCCA
77044 ACATTCTAGA
Statistics
Matches: 57, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
41 2 0.04
42 55 0.96
ACGTcount: A:0.21, C:0.38, G:0.18, T:0.22
Consensus pattern (42 bp):
CCTATCATCCCTCAAGAGGCCCCTCCCACCGTTCAAGAGGCC
Found at i:77027 original size:21 final size:21
Alignment explanation
Indices: 76936--77040 Score: 95
Period size: 21 Copynumber: 5.0 Consensus size: 21
76926 GACTCACCTA
*
76936 TCATCGTTCAAGAGGCCTCCCC
1 TCATCGTTCAAGAGGCC-CCTC
*
76958 T-ATCGTTCAAGAGGCCCCTA
1 TCATCGTTCAAGAGGCCCCTC
** *
76978 TCATCCCTCAAGAGTCCCCTC
1 TCATCGTTCAAGAGGCCCCTC
* * * *
76999 CCACCGTTCAAGAGGCCACTG
1 TCATCGTTCAAGAGGCCCCTC
* *
77020 TCATCGTTGAAGAGGTCCCTC
1 TCATCGTTCAAGAGGCCCCTC
77041 CCAACATTCT
Statistics
Matches: 63, Mismatches: 19, Indels: 3
0.74 0.22 0.04
Matches are distributed among these distances:
20 3 0.05
21 59 0.94
22 1 0.02
ACGTcount: A:0.21, C:0.37, G:0.19, T:0.23
Consensus pattern (21 bp):
TCATCGTTCAAGAGGCCCCTC
Found at i:78445 original size:14 final size:14
Alignment explanation
Indices: 78426--78461 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
78416 ATTGTTTAAT
78426 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
78440 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
78454 TGATTTGT
1 TGATTTGT
78462 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:78617 original size:33 final size:33
Alignment explanation
Indices: 78567--78694 Score: 186
Period size: 33 Copynumber: 3.8 Consensus size: 33
78557 AAAACAGAAT
* **
78567 ATCGCAACGCGGAAATGACTATCGCAACTAGAGA
1 ATCGCAATGC-GAAATGAAAATCGCAACTAGAGA
78601 ATCGCAATGCGAAATGAAAATCGCAA-TGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACT-AGAGA
*
78634 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACTAGAGA
78667 ATCGCAATGCGAAAATGAAAATCGCAAC
1 ATCGCAATGCG-AAATGAAAATCGCAAC
78695 ACGAAACTAA
Statistics
Matches: 87, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
32 1 0.01
33 61 0.70
34 25 0.29
ACGTcount: A:0.44, C:0.20, G:0.23, T:0.14
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACTAGAGA
Found at i:78638 original size:14 final size:14
Alignment explanation
Indices: 78619--78675 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
78609 GCGAAATGAA
78619 AATCGCAATGAGAG
1 AATCGCAATGAGAG
*
78633 AATCGCAATGCGAAATGAA
1 AATCGCAAT--G--A-GAG
*
78652 AATCGCAACGAGAG
1 AATCGCAATGAGAG
78666 AATCGCAATG
1 AATCGCAATG
78676 CGAAAATGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
14 20 0.59
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 10 0.29
ACGTcount: A:0.44, C:0.18, G:0.25, T:0.14
Consensus pattern (14 bp):
AATCGCAATGAGAG
Found at i:78790 original size:20 final size:20
Alignment explanation
Indices: 78744--78876 Score: 198
Period size: 20 Copynumber: 6.7 Consensus size: 20
78734 ACGATTCTCT
**
78744 CGTTGCGATTTTCATTT-CG
1 CGTTGCGATAGTCATTTCCG
*
78763 CATTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTTCCG
78783 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTTCCG
78803 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTTCCG
78823 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTTCCG
*
78843 TGTTGCGATAGTCATATT-CG
1 CGTTGCGATAGTCAT-TTCCG
*
78863 CGTTGCAATAGTCA
1 CGTTGCGATAGTCA
78877 AATGAATGTC
Statistics
Matches: 105, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
19 14 0.13
20 89 0.85
21 2 0.02
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTCCG
Found at i:81309 original size:24 final size:24
Alignment explanation
Indices: 81275--81328 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
81265 CTGAAAAATC
*
81275 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTAACCAAG
* *
81299 ATCAAAGTCCGGGTATTAACCAAG
1 ATCAAAATCCGAGTATTAACCAAG
81323 ATCAAA
1 ATCAAA
81329 TTTTGAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTAACCAAG
Found at i:82195 original size:20 final size:20
Alignment explanation
Indices: 82170--82256 Score: 138
Period size: 20 Copynumber: 4.3 Consensus size: 20
82160 AAATTCAGTA
82170 TTGCGATAGTCAGAATCGCG
1 TTGCGATAGTCAGAATCGCG
*
82190 TTGCGATAGTCAGAATCTCG
1 TTGCGATAGTCAGAATCGCG
*
82210 TTGCGATAGTCAGAATCTCG
1 TTGCGATAGTCAGAATCGCG
* *
82230 TTGCGATAGTCAGATTTGCG
1 TTGCGATAGTCAGAATCGCG
82250 TTGCGAT
1 TTGCGAT
82257 TTACGTATTC
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 63 1.00
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (20 bp):
TTGCGATAGTCAGAATCGCG
Found at i:82273 original size:20 final size:20
Alignment explanation
Indices: 82250--82435 Score: 318
Period size: 20 Copynumber: 9.3 Consensus size: 20
82240 CAGATTTGCG
*
82250 TTGCGATTTACGTATTCGCA
1 TTGCGATTTACGCATTCGCA
82270 TTGCGATTTACGCATTCGCA
1 TTGCGATTTACGCATTCGCA
* *
82290 TTACGATTTACGTATTCGCA
1 TTGCGATTTACGCATTCGCA
82310 TTGCGATTTACGCATTCGCA
1 TTGCGATTTACGCATTCGCA
82330 TTGCGATTTACGCATTCGCA
1 TTGCGATTTACGCATTCGCA
82350 TTGCGATTTACGCATTCGCA
1 TTGCGATTTACGCATTCGCA
82370 TTGCGATTTACGCATTCGCA
1 TTGCGATTTACGCATTCGCA
*
82390 TTGCGATTTACGAATTCGCA
1 TTGCGATTTACGCATTCGCA
* *
82410 TTGCGATTTACGTACTCGCA
1 TTGCGATTTACGCATTCGCA
82430 TTGCGA
1 TTGCGA
82436 ATTAGGAAAA
Statistics
Matches: 158, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 158 1.00
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (20 bp):
TTGCGATTTACGCATTCGCA
Found at i:83506 original size:16 final size:16
Alignment explanation
Indices: 83485--83525 Score: 82
Period size: 16 Copynumber: 2.6 Consensus size: 16
83475 TTTTATATCA
83485 CAAGTCATATTCAAAG
1 CAAGTCATATTCAAAG
83501 CAAGTCATATTCAAAG
1 CAAGTCATATTCAAAG
83517 CAAGTCATA
1 CAAGTCATA
83526 ACATATATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.44, C:0.20, G:0.12, T:0.24
Consensus pattern (16 bp):
CAAGTCATATTCAAAG
Found at i:83694 original size:14 final size:14
Alignment explanation
Indices: 83677--83704 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
83667 ATCATAACAA
83677 AATTATATAACTAT
1 AATTATATAACTAT
83691 AATTATATAACTAT
1 AATTATATAACTAT
83705 TCTTTCACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (14 bp):
AATTATATAACTAT
Found at i:84315 original size:31 final size:31
Alignment explanation
Indices: 84280--84360 Score: 72
Period size: 31 Copynumber: 2.6 Consensus size: 31
84270 GAGTCAATAC
*
84280 TTTGATACGTGATATGTATCACATGATAACT
1 TTTGATACGTGATATGTATCACATAATAACT
* * * * * * *
84311 TTTGAGATGTGACATATATTATATAATTACT
1 TTTGATACGTGATATGTATCACATAATAACT
* *
84342 TTTGATACATAATATGTAT
1 TTTGATACGTGATATGTAT
84361 TATGTAATCG
Statistics
Matches: 36, Mismatches: 14, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.43
Consensus pattern (31 bp):
TTTGATACGTGATATGTATCACATAATAACT
Found at i:87759 original size:22 final size:22
Alignment explanation
Indices: 87720--87761 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
87710 CTCGTACCTA
*
87720 TTTAAATCTTAAAATTTAAAAC
1 TTTAAATCCTAAAATTTAAAAC
* *
87742 TTTAAATCCTATATTTTAAA
1 TTTAAATCCTAAAATTTAAA
87762 CATAAATCAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.45, C:0.10, G:0.00, T:0.45
Consensus pattern (22 bp):
TTTAAATCCTAAAATTTAAAAC
Found at i:100812 original size:20 final size:20
Alignment explanation
Indices: 100787--100835 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
100777 TGAACAGTAA
*
100787 TGAACAATACCGATATTGTG
1 TGAACAATACCGATACTGTG
*
100807 TGAACATTACCGATACTGTG
1 TGAACAATACCGATACTGTG
100827 TGAACAATA
1 TGAACAATA
100836 ATGAACATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (20 bp):
TGAACAATACCGATACTGTG
Found at i:103988 original size:18 final size:18
Alignment explanation
Indices: 103965--104020 Score: 69
Period size: 18 Copynumber: 3.0 Consensus size: 18
103955 TATATTTTCC
103965 AACAATTGGTATCTTTTT
1 AACAATTGGTATCTTTTT
*
103983 AACAATTGATATCCTTTTGTT
1 AACAATTGGTAT-C-TTT-TT
104004 AACAATTGGTAT-TTTTT
1 AACAATTGGTATCTTTTT
104021 CATTAAACAT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
17 2 0.06
18 14 0.42
19 1 0.03
20 3 0.09
21 13 0.39
ACGTcount: A:0.29, C:0.11, G:0.11, T:0.50
Consensus pattern (18 bp):
AACAATTGGTATCTTTTT
Found at i:104026 original size:21 final size:19
Alignment explanation
Indices: 103965--104020 Score: 60
Period size: 21 Copynumber: 2.9 Consensus size: 19
103955 TATATTTTCC
*
103965 AACAATTGGTA-TCTTTTT
1 AACAATTGGTATTTTTTTT
* *
103983 AACAATTGATATCCTTTTGTT
1 AACAATTGGTAT--TTTTTTT
104004 AACAATTGGTATTTTTT
1 AACAATTGGTATTTTTT
104021 CATTAAACAT
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
18 10 0.33
19 4 0.13
21 16 0.53
ACGTcount: A:0.29, C:0.11, G:0.11, T:0.50
Consensus pattern (19 bp):
AACAATTGGTATTTTTTTT
Found at i:104274 original size:20 final size:20
Alignment explanation
Indices: 104246--104291 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
104236 TGAACAGTAA
*
104246 TGAATAATATCGATACTGTG
1 TGAACAATATCGATACTGTG
104266 TGAACAATATCGATACTGTG
1 TGAACAATATCGATACTGTG
104286 TGAACA
1 TGAACA
104292 GTAATAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (20 bp):
TGAACAATATCGATACTGTG
Found at i:104356 original size:20 final size:20
Alignment explanation
Indices: 104331--104370 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
104321 TGAATGTAAA
*
104331 AGGGGTATCGATACTGCTAT
1 AGGGGTACCGATACTGCTAT
104351 AGGGGTACCGATACTGCTAT
1 AGGGGTACCGATACTGCTAT
104371 TGTTCACACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (20 bp):
AGGGGTACCGATACTGCTAT
Found at i:104784 original size:34 final size:34
Alignment explanation
Indices: 104736--104800 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
104726 AAAGAGGTTT
*
104736 AGGTTCTAGCTTAGCCCATGAAAAGCTAGGGGAA
1 AGGTTCTAGCTTAGCCCATGAAAAACTAGGGGAA
* **
104770 AGGTTCTAGTTTAGCCTGTGAAAAACTAGGG
1 AGGTTCTAGCTTAGCCCATGAAAAACTAGGG
104801 AGTTGTAAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.25
Consensus pattern (34 bp):
AGGTTCTAGCTTAGCCCATGAAAAACTAGGGGAA
Found at i:106193 original size:23 final size:23
Alignment explanation
Indices: 106166--106263 Score: 142
Period size: 23 Copynumber: 4.3 Consensus size: 23
106156 TAAATGCACT
* *
106166 AGTGCCACATAGAATTGCACCGA
1 AGTGCCGCGTAGAATTGCACCGA
*
106189 AGTGCCGCGTAGAATTGTACCGA
1 AGTGCCGCGTAGAATTGCACCGA
*
106212 AGTGCCGCGTAGAATTGCACTGA
1 AGTGCCGCGTAGAATTGCACCGA
* *
106235 AGTGCCGCGTAGAAATGCACCGT
1 AGTGCCGCGTAGAATTGCACCGA
106258 AGTGCC
1 AGTGCC
106264 ATATAAAATG
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 67 1.00
ACGTcount: A:0.28, C:0.24, G:0.29, T:0.19
Consensus pattern (23 bp):
AGTGCCGCGTAGAATTGCACCGA
Found at i:106547 original size:30 final size:29
Alignment explanation
Indices: 106495--106551 Score: 69
Period size: 30 Copynumber: 1.9 Consensus size: 29
106485 GTAAACATAC
* *
106495 CACATATTCATATAAACTCGTAGCTTCAGT
1 CACATATACATATAAACACGTAG-TTCAGT
* *
106525 CACATATACATTTAATCACGTAGTTCA
1 CACATATACATATAAACACGTAGTTCA
106552 TGTAAATTCT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
29 4 0.17
30 19 0.83
ACGTcount: A:0.35, C:0.23, G:0.09, T:0.33
Consensus pattern (29 bp):
CACATATACATATAAACACGTAGTTCAGT
Found at i:112891 original size:59 final size:59
Alignment explanation
Indices: 112792--112920 Score: 177
Period size: 59 Copynumber: 2.2 Consensus size: 59
112782 CATCATGCTG
** * *
112792 CATATTCGGGAATACACTAAAGGATACCTAGTGTATATGGTGGGCACGACCTTATGTGT
1 CATATTCGGGAATACACTAAAGGATACCTAGTACAGATGGTGGACACGACCTTATGTGT
* ** *
112851 CATATTCGGGACTGTACTTAAGGATACCTAGTACAGATGGTGGACACGACCTTATGTGT
1 CATATTCGGGAATACACTAAAGGATACCTAGTACAGATGGTGGACACGACCTTATGTGT
*
112910 CATACTCGGGA
1 CATATTCGGGA
112921 TTGCACTACG
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (59 bp):
CATATTCGGGAATACACTAAAGGATACCTAGTACAGATGGTGGACACGACCTTATGTGT
Found at i:113012 original size:21 final size:21
Alignment explanation
Indices: 112974--113023 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
112964 TTGAGGGTGT
* * *
112974 TATATTGGGCTATTGTTTATTG
1 TATATT-GTCTATGGTTTATGG
*
112996 TCTATTGTCTATGGTTTATGG
1 TATATTGTCTATGGTTTATGG
113017 TATATTG
1 TATATTG
113024 GTAAAATAAG
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.18, C:0.06, G:0.22, T:0.54
Consensus pattern (21 bp):
TATATTGTCTATGGTTTATGG
Found at i:113116 original size:45 final size:45
Alignment explanation
Indices: 113016--113203 Score: 333
Period size: 45 Copynumber: 4.2 Consensus size: 45
113006 ATGGTTTATG
*
113016 GTATATTGGTAAAATAAGCTTACGAGCTTATGGGAT-AATGGCAA
1 GTATATTGGTAAAATAAGCTTACGAGCTTATGGGATAAATGGTAA
113060 GTATATTGGTAAAATAAGCTTACGAGCTTATGGGATAAATGGTAA
1 GTATATTGGTAAAATAAGCTTACGAGCTTATGGGATAAATGGTAA
113105 GTATATTGGTAAAATAAGCTTACGAGCTTATGGGATAAATGGTAA
1 GTATATTGGTAAAATAAGCTTACGAGCTTATGGGATAAATGGTAA
*
113150 GTATGTTGGTAAAATAAGCTTACGAGCTTATGGGATTAAATGGTAA
1 GTATATTGGTAAAATAAGCTTACGAGCTTATGGGA-TAAATGGTAA
*
113196 ATATATTG
1 GTATATTG
113204 ATAAGAAATT
Statistics
Matches: 138, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
44 36 0.26
45 86 0.62
46 16 0.12
ACGTcount: A:0.37, C:0.07, G:0.24, T:0.32
Consensus pattern (45 bp):
GTATATTGGTAAAATAAGCTTACGAGCTTATGGGATAAATGGTAA
Found at i:113144 original size:25 final size:25
Alignment explanation
Indices: 113071--113144 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
113061 TATATTGGTA
113071 AAATAAGCTTACGAGCTTATGGGAT
1 AAATAAGCTTACGAGCTTATGGGAT
* *
113096 AAAT--G-GTA--AG-TATATTGG-T
1 AAATAAGCTTACGAGCT-TATGGGAT
113115 AAAATAAGCTTACGAGCTTATGGGAT
1 -AAATAAGCTTACGAGCTTATGGGAT
113141 AAAT
1 AAAT
113145 GGTAAGTATG
Statistics
Matches: 36, Mismatches: 4, Indels: 18
0.62 0.07 0.31
Matches are distributed among these distances:
19 2 0.06
20 11 0.31
22 3 0.08
23 3 0.08
25 15 0.42
26 2 0.06
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (25 bp):
AAATAAGCTTACGAGCTTATGGGAT
Found at i:115878 original size:18 final size:17
Alignment explanation
Indices: 115833--115879 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 17
115823 TAGAAAGAAT
115833 AAAAAGAAAAACAAAAC
1 AAAAAGAAAAACAAAAC
* *
115850 AAAGAAAAAAAACAAATAG
1 AAA-AAGAAAAACAAA-AC
115869 AAAAAGAAAAA
1 AAAAAGAAAAA
115880 AATGAGAGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
17 3 0.12
18 18 0.72
19 4 0.16
ACGTcount: A:0.83, C:0.06, G:0.09, T:0.02
Consensus pattern (17 bp):
AAAAAGAAAAACAAAAC
Found at i:119917 original size:7 final size:7
Alignment explanation
Indices: 119904--119941 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
119894 TTATATTGGG
119904 CTATTGT
1 CTATTGT
*
119911 TTATTGT
1 CTATTGT
119918 CTATTGT
1 CTATTGT
*
119925 CTATGGT
1 CTATTGT
119932 -TATTGT
1 CTATTGT
119938 CTAT
1 CTAT
119942 GGTTTATGGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
6 5 0.19
7 21 0.81
ACGTcount: A:0.16, C:0.11, G:0.16, T:0.58
Consensus pattern (7 bp):
CTATTGT
Found at i:119936 original size:20 final size:20
Alignment explanation
Indices: 119911--119957 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
119901 GGGCTATTGT
*
119911 TTATTGTCTATTGTCTATGG
1 TTATTGTCTATGGTCTATGG
*
119931 TTATTGTCTATGGTTTATGG
1 TTATTGTCTATGGTCTATGG
119951 TATATTG
1 T-TATTG
119958 GTAAATTAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 19 0.79
21 5 0.21
ACGTcount: A:0.17, C:0.06, G:0.21, T:0.55
Consensus pattern (20 bp):
TTATTGTCTATGGTCTATGG
Found at i:119937 original size:13 final size:13
Alignment explanation
Indices: 119905--119945 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
119895 TATATTGGGC
* *
119905 TATTGTTTATTGT
1 TATTGTCTATGGT
119918 CTATTGTCTATGGT
1 -TATTGTCTATGGT
119932 TATTGTCTATGGT
1 TATTGTCTATGGT
119945 T
1 T
119946 TATGGTATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 14 0.56
14 11 0.44
ACGTcount: A:0.15, C:0.07, G:0.20, T:0.59
Consensus pattern (13 bp):
TATTGTCTATGGT
Found at i:120050 original size:45 final size:45
Alignment explanation
Indices: 119950--120137 Score: 306
Period size: 45 Copynumber: 4.2 Consensus size: 45
119940 ATGGTTTATG
* * * *
119950 GTATATTGGTAAATTAAGCGTACGAGCTTATGGAAT-AATGGCAA
1 GTATATTGGTAAAATAAGCTTACGAGCTTATGGGATAAATGGTAA
*
119994 GTATATTGGTAAAATAATCTTACGAGCTTATGGGATAAATGGTAA
1 GTATATTGGTAAAATAAGCTTACGAGCTTATGGGATAAATGGTAA
120039 GTATATTGGTAAAATAAGCTTACGAGCTTATGGGATAAATGGTAA
1 GTATATTGGTAAAATAAGCTTACGAGCTTATGGGATAAATGGTAA
120084 GTATATTGGTAAAATAAGCTTACGAGCTTATGGGATTAAATGGTAA
1 GTATATTGGTAAAATAAGCTTACGAGCTTATGGGA-TAAATGGTAA
*
120130 ATATATTG
1 GTATATTG
120138 ATAAGAAATT
Statistics
Matches: 135, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
44 32 0.24
45 86 0.64
46 17 0.13
ACGTcount: A:0.37, C:0.07, G:0.23, T:0.32
Consensus pattern (45 bp):
GTATATTGGTAAAATAAGCTTACGAGCTTATGGGATAAATGGTAA
Found at i:121059 original size:43 final size:44
Alignment explanation
Indices: 120944--121185 Score: 124
Period size: 43 Copynumber: 5.8 Consensus size: 44
120934 TTTGAACCAA
* * * *
120944 AAACGCCGCCATAGGTCAAGATCTATAGC-AGCATTTTTGGAAC
1 AAACGCCGCAAAAGGTCGAGATCTATAGCGAGCATTTTCGGAAC
* ** * * * *
120987 AAACGCCGTAAAAAATCGATATCTCTAGCGA-CGTTTTCGGTAC
1 AAACGCCGCAAAAGGTCGAGATCTATAGCGAGCATTTTCGGAAC
* *
121030 AAACGCCGCAAAAGGTCGAGATATATAGCG-GC-----C-CAA-
1 AAACGCCGCAAAAGGTCGAGATCTATAGCGAGCATTTTCGGAAC
* * * **
121066 AAATGCCGCAAAATGT-TAGATCTATAGCG-GCATTTTTTGAAC
1 AAACGCCGCAAAAGGTCGAGATCTATAGCGAGCATTTTCGGAAC
* * * * *
121108 AAATGCCGCAAAAGGT-TAGATTTATAGCG-GCGTTTGTATC-TAA-
1 AAACGCCGCAAAAGGTCGAGATCTATAGCGAGC-ATT-T-TCGGAAC
121151 AAACGCCGCAAAAGGTC-AGATCTATAGCGA-CATTT
1 AAACGCCGCAAAAGGTCGAGATCTATAGCGAGCATTT
121186 GTAAACGCCG
Statistics
Matches: 152, Mismatches: 33, Indels: 30
0.71 0.15 0.14
Matches are distributed among these distances:
35 13 0.09
36 14 0.09
37 1 0.01
38 1 0.01
41 3 0.02
42 31 0.20
43 84 0.55
44 4 0.03
45 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (44 bp):
AAACGCCGCAAAAGGTCGAGATCTATAGCGAGCATTTTCGGAAC
Found at i:121187 original size:43 final size:43
Alignment explanation
Indices: 121064--121188 Score: 157
Period size: 43 Copynumber: 2.9 Consensus size: 43
121054 ATAGCGGCCC
*
121064 AAAAATGCCGCAAAATGTTAGATCTATAGCGGCATTT-T-TTG
1 AAAAATGCCGCAAAAGGTTAGATCTATAGCGGCATTTGTATTG
* *
121105 AACAAATGCCGCAAAAGGTTAGATTTATAGCGGCGTTTGTATCT-
1 AA-AAATGCCGCAAAAGGTTAGATCTATAGCGGCATTTGTAT-TG
* * *
121149 AAAAACGCCGCAAAAGGTCAGATCTATAGCGACATTTGTA
1 AAAAATGCCGCAAAAGGTTAGATCTATAGCGGCATTTGTA
121189 AACGCCGCTA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
41 2 0.03
42 32 0.44
43 34 0.47
44 3 0.04
45 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (43 bp):
AAAAATGCCGCAAAAGGTTAGATCTATAGCGGCATTTGTATTG
Found at i:122342 original size:12 final size:12
Alignment explanation
Indices: 122325--122364 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
122315 ACTATACAGT
122325 ATGAACAGTACC
1 ATGAACAGTACC
122337 ATGAACAGTA--
1 ATGAACAGTACC
*
122347 ATGAGCAGTACC
1 ATGAACAGTACC
122359 ATGAAC
1 ATGAAC
122365 GATGATGAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
10 9 0.38
12 15 0.62
ACGTcount: A:0.42, C:0.20, G:0.20, T:0.17
Consensus pattern (12 bp):
ATGAACAGTACC
Found at i:122355 original size:22 final size:21
Alignment explanation
Indices: 122320--122390 Score: 72
Period size: 22 Copynumber: 3.3 Consensus size: 21
122310 ATAGTACTAT
122320 ACAGTATGAACAGTACCATGA
1 ACAGTATGAACAGTACCATGA
*
122341 ACAGTAATGAGCAGTACCATGA
1 ACAGT-ATGAACAGTACCATGA
* * *
122363 AC-GATGATGAACAATAACGTGA
1 ACAG-T-ATGAACAGTACCATGA
122385 ACAGTA
1 ACAGTA
122391 CCGAATGCTA
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
21 7 0.17
22 33 0.80
23 1 0.02
ACGTcount: A:0.44, C:0.17, G:0.21, T:0.18
Consensus pattern (21 bp):
ACAGTATGAACAGTACCATGA
Found at i:123078 original size:32 final size:32
Alignment explanation
Indices: 123032--123216 Score: 266
Period size: 32 Copynumber: 5.8 Consensus size: 32
123022 GGACCTAGCA
123032 ATATGTCCCGAAAGACATAGGTAATCCTTTCC
1 ATATGTCCCGAAAGACATAGGTAATCCTTTCC
* * *
123064 ATATGTCTCAAAAGACATAGGTAATCCTGTCC
1 ATATGTCCCGAAAGACATAGGTAATCCTTTCC
*
123096 ATATGTCCCAAAAGACATAGGTAAT-CTTGTCC
1 ATATGTCCCGAAAGACATAGGTAATCCTT-TCC
* *
123128 ATATTTCCCGAAAGACATAGGTAATCCTATCC
1 ATATGTCCCGAAAGACATAGGTAATCCTTTCC
*
123160 ATATGTCCCGAAAGACATAGGTAAT-CTTGTCT
1 ATATGTCCCGAAAGACATAGGTAATCCTT-TCC
*
123192 ATATGTCCCGAAAGGCATAGGTAAT
1 ATATGTCCCGAAAGACATAGGTAAT
123217 GCTCGACTCT
Statistics
Matches: 138, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
31 4 0.03
32 132 0.96
33 2 0.01
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.28
Consensus pattern (32 bp):
ATATGTCCCGAAAGACATAGGTAATCCTTTCC
Found at i:123211 original size:96 final size:96
Alignment explanation
Indices: 123032--123216 Score: 298
Period size: 96 Copynumber: 1.9 Consensus size: 96
123022 GGACCTAGCA
* *
123032 ATATGTCCCGAAAGACATAGGTAATCCTTTCCATATGTCTCAAAAGACATAGGTAATCCTGTCCA
1 ATATGTCCCGAAAGACATAGGTAATCCTATCCATATGTCCCAAAAGACATAGGTAATCCTGTCCA
123097 TATGTCCCAAAAGACATAGGTAATCTTGTCC
66 TATGTCCCAAAAGACATAGGTAATCTTGTCC
* * * *
123128 ATATTTCCCGAAAGACATAGGTAATCCTATCCATATGTCCCGAAAGACATAGGTAATCTTGTCTA
1 ATATGTCCCGAAAGACATAGGTAATCCTATCCATATGTCCCAAAAGACATAGGTAATCCTGTCCA
* *
123193 TATGTCCCGAAAGGCATAGGTAAT
66 TATGTCCCAAAAGACATAGGTAAT
123217 GCTCGACTCT
Statistics
Matches: 81, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 81 1.00
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.28
Consensus pattern (96 bp):
ATATGTCCCGAAAGACATAGGTAATCCTATCCATATGTCCCAAAAGACATAGGTAATCCTGTCCA
TATGTCCCAAAAGACATAGGTAATCTTGTCC
Found at i:126317 original size:29 final size:30
Alignment explanation
Indices: 126283--126364 Score: 103
Period size: 30 Copynumber: 2.8 Consensus size: 30
126273 CCCGAATGAC
126283 CTATCCAGAGGTCACAAAG-ACCCCGACAA
1 CTATCCAGAGGTCACAAAGAACCCCGACAA
* *
126312 CTATCCAGAGGTCATAAAGAACCTCGACAA
1 CTATCCAGAGGTCACAAAGAACCCCGACAA
* * * *
126342 CTGTCCATAGGTCCCGAAGAACC
1 CTATCCAGAGGTCACAAAGAACC
126365 TAGGTAAACT
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
29 18 0.40
30 27 0.60
ACGTcount: A:0.35, C:0.32, G:0.18, T:0.15
Consensus pattern (30 bp):
CTATCCAGAGGTCACAAAGAACCCCGACAA
Found at i:127673 original size:20 final size:23
Alignment explanation
Indices: 127645--127745 Score: 92
Period size: 24 Copynumber: 4.6 Consensus size: 23
127635 TTCCCTTTGA
*
127645 AGTGTATCGATGCATTC-T-A-C
1 AGTGCATCGATGCATTCTTAACC
127665 AGTGCATCGATGCATTCTTTAACC
1 AGTGCATCGATGCATTC-TTAACC
*
127689 ACTGCATCGATGCATTCTTTAA-C
1 AGTGCATCGATGCATTC-TTAACC
127712 ATGTGCATCGATGCA--C-T-ACC
1 A-GTGCATCGATGCATTCTTAACC
*
127732 AATGCATCGATGCA
1 AGTGCATCGATGCA
127746 CCAATTTCAA
Statistics
Matches: 71, Mismatches: 4, Indels: 13
0.81 0.05 0.15
Matches are distributed among these distances:
19 13 0.18
20 19 0.27
22 2 0.03
23 3 0.04
24 34 0.48
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.31
Consensus pattern (23 bp):
AGTGCATCGATGCATTCTTAACC
Found at i:127699 original size:24 final size:24
Alignment explanation
Indices: 127667--127726 Score: 95
Period size: 24 Copynumber: 2.5 Consensus size: 24
127657 CATTCTACAG
127667 TGCATCGATGCATTCTTTAACCA-C
1 TGCATCGATGCATTCTTTAA-CATC
*
127691 TGCATCGATGCATTCTTTAACATG
1 TGCATCGATGCATTCTTTAACATC
127715 TGCATCGATGCA
1 TGCATCGATGCA
127727 CTACCAATGC
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
23 2 0.06
24 32 0.94
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (24 bp):
TGCATCGATGCATTCTTTAACATC
Found at i:129640 original size:41 final size:41
Alignment explanation
Indices: 129597--129824 Score: 316
Period size: 41 Copynumber: 5.5 Consensus size: 41
129587 AAAACGACGA
*
129597 CGTTTGTATAAAAATGCCACTAAAGTACGAGTCTTTAGCGA
1 CGTTTGTATAAAAATGCCACTAAAGTACGAGTCTTTAGCGG
**
129638 CGTTTGT-TGAAAAACCACCACTAAAGTACGAGTCTTTAGCGG
1 CGTTTGTAT-AAAAA-TGCCACTAAAGTACGAGTCTTTAGCGG
* *
129680 CGTCTGTATAAAAATGCCACTAAAGTATGAGTCTTTAGCGG
1 CGTTTGTATAAAAATGCCACTAAAGTACGAGTCTTTAGCGG
* *
129721 CGTCTGTATAAAAATGTCACTAAAGTACGAGTCTTTAGCGG
1 CGTTTGTATAAAAATGCCACTAAAGTACGAGTCTTTAGCGG
* * *
129762 CTTTTGTATAAAAACGCCACTAAATTACGAGTCTTTAGCGG
1 CGTTTGTATAAAAATGCCACTAAAGTACGAGTCTTTAGCGG
*
129803 CGTTTGT-TAAAAAATGCAACTA
1 CGTTTGTAT-AAAAATGCCACTA
129825 TGGATGAACC
Statistics
Matches: 166, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
40 2 0.01
41 128 0.77
42 35 0.21
43 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (41 bp):
CGTTTGTATAAAAATGCCACTAAAGTACGAGTCTTTAGCGG
Found at i:133080 original size:14 final size:14
Alignment explanation
Indices: 133063--133103 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
133053 TAAATTAAAA
133063 AAAATAAAAATAAT
1 AAAATAAAAATAAT
133077 AAAATAATAAATAAT
1 AAAATAA-AAATAAT
* *
133092 GAATTAAAAATA
1 AAAATAAAAATA
133104 GTAATAAAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (14 bp):
AAAATAAAAATAAT
Found at i:133183 original size:17 final size:17
Alignment explanation
Indices: 133158--133191 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
133148 CAATGAGATA
*
133158 AAATTAAATAAACAAAT
1 AAATAAAATAAACAAAT
*
133175 AAATAAAATAAATAAAT
1 AAATAAAATAAACAAAT
133192 TTGGATAAAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (17 bp):
AAATAAAATAAACAAAT
Found at i:136593 original size:19 final size:18
Alignment explanation
Indices: 136563--136608 Score: 65
Period size: 19 Copynumber: 2.5 Consensus size: 18
136553 CACAACCAAC
*
136563 TATTATTGTTATTGATGT
1 TATTATTATTATTGATGT
*
136581 TATTTATTATTATTGTTGT
1 TA-TTATTATTATTGATGT
136600 TATTATTAT
1 TATTATTAT
136609 GTATGCTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 9 0.36
19 16 0.64
ACGTcount: A:0.24, C:0.00, G:0.11, T:0.65
Consensus pattern (18 bp):
TATTATTATTATTGATGT
Found at i:139740 original size:2 final size:2
Alignment explanation
Indices: 139733--139767 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
139723 TTGTAGAATC
139733 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
139768 TGAAAACACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:143189 original size:21 final size:21
Alignment explanation
Indices: 143165--143273 Score: 94
Period size: 21 Copynumber: 5.6 Consensus size: 21
143155 GGTAATACTG
143165 CACAGAATGAGGTTGCCAGTA
1 CACAGAATGAGGTTGCCAGTA
143186 CACATG-ATGA---TGCCAGTA
1 CACA-GAATGAGGTTGCCAGTA
143204 CACAGAATGAGGTTGCCAGTA
1 CACAGAATGAGGTTGCCAGTA
*** * *
143225 CAC---AT--GG-TAATACTG
1 CACAGAATGAGGTTGCCAGTA
143240 CACAGAATGAGGTTGCCAGTA
1 CACAGAATGAGGTTGCCAGTA
143261 CACAGAATGAGGT
1 CACAGAATGAGGT
143274 CTAGAAACAA
Statistics
Matches: 67, Mismatches: 10, Indels: 22
0.68 0.10 0.22
Matches are distributed among these distances:
15 6 0.09
16 2 0.03
17 1 0.01
18 20 0.30
20 2 0.03
21 35 0.52
22 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.27, T:0.20
Consensus pattern (21 bp):
CACAGAATGAGGTTGCCAGTA
Found at i:143219 original size:39 final size:36
Alignment explanation
Indices: 143157--143264 Score: 144
Period size: 39 Copynumber: 2.9 Consensus size: 36
143147 AAAATGCTGG
*
143157 TAATACTGCACAGAATGAGGTTGCCAGTACACATGA
1 TAATACTACACAGAATGAGGTTGCCAGTACACATGA
* * *
143193 TGATGCCAGTACACAGAATGAGGTTGCCAGTACACATGG
1 TAAT---ACTACACAGAATGAGGTTGCCAGTACACATGA
*
143232 TAATACTGCACAGAATGAGGTTGCCAGTACACA
1 TAATACTACACAGAATGAGGTTGCCAGTACACA
143265 GAATGAGGTC
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
36 30 0.48
39 32 0.52
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.21
Consensus pattern (36 bp):
TAATACTACACAGAATGAGGTTGCCAGTACACATGA
Found at i:143251 original size:36 final size:36
Alignment explanation
Indices: 143154--143264 Score: 159
Period size: 36 Copynumber: 3.0 Consensus size: 36
143144 ATCAAAATGC
143154 TGGTAATACTGCACAGAATGAGGTTGCCAGTACACA
1 TGGTAATACTGCACAGAATGAGGTTGCCAGTACACA
* * * *
143190 TGATGATGCCAGTACACAGAATGAGGTTGCCAGTACACA
1 TGGTAAT---ACTGCACAGAATGAGGTTGCCAGTACACA
143229 TGGTAATACTGCACAGAATGAGGTTGCCAGTACACA
1 TGGTAATACTGCACAGAATGAGGTTGCCAGTACACA
143265 GAATGAGGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
36 32 0.50
39 32 0.50
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (36 bp):
TGGTAATACTGCACAGAATGAGGTTGCCAGTACACA
Found at i:145275 original size:30 final size:30
Alignment explanation
Indices: 145232--145293 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
145222 ATGCATGAGA
* *
145232 GTATGCATGTATGAATGTATGCGTGAGTTG
1 GTATGAATATATGAATGTATGCGTGAGTTG
145262 GTATGAATATATGAATGTATGCGTGAGTTG
1 GTATGAATATATGAATGTATGCGTGAGTTG
145292 GT
1 GT
145294 TAGTGGTTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.26, C:0.05, G:0.32, T:0.37
Consensus pattern (30 bp):
GTATGAATATATGAATGTATGCGTGAGTTG
Found at i:156539 original size:3 final size:3
Alignment explanation
Indices: 156531--156581 Score: 59
Period size: 3 Copynumber: 17.0 Consensus size: 3
156521 TCTAATTTTA
* * *
156531 ATT ATT ATT ATT ATT ATT TTT TTT AACT A-T ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT
156576 ATT ATT
1 ATT ATT
156582 TAATACATGT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
2 2 0.05
3 40 0.93
4 1 0.02
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:156563 original size:24 final size:25
Alignment explanation
Indices: 156526--156572 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
156516 TTCTATCTAA
*
156526 TTTTAATTATTATTATTATTATTTT
1 TTTTAACTATTATTATTATTATTTT
156551 TTTTAACTA-TATTATTATTATT
1 TTTTAACTATTATTATTATTATT
156573 ATTATTATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 13 0.62
25 8 0.38
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (25 bp):
TTTTAACTATTATTATTATTATTTT
Found at i:158614 original size:22 final size:22
Alignment explanation
Indices: 158589--158632 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
158579 TCAAACGATG
*
158589 CAATGTGTGTTATTTTAAGTGA
1 CAATGTATGTTATTTTAAGTGA
* * *
158611 CAATTTATTTTATTTTATGTGA
1 CAATGTATGTTATTTTAAGTGA
158633 ATGTAAATTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.27, C:0.05, G:0.16, T:0.52
Consensus pattern (22 bp):
CAATGTATGTTATTTTAAGTGA
Found at i:161743 original size:2 final size:2
Alignment explanation
Indices: 161736--161769 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
161726 ATTTCATCCC
161736 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
161770 TTACATTTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:162500 original size:242 final size:242
Alignment explanation
Indices: 162075--162561 Score: 956
Period size: 242 Copynumber: 2.0 Consensus size: 242
162065 ATGCAGTTCA
162075 TGAATGTATATAGCATTGTCCTAAACCAATTAGCCAATATAACAATTTCATGCATAAATTCAAGA
1 TGAATGTATATAGCATTGTCCTAAACCAATTAGCCAATATAACAATTTCATGCATAAATTCAAGA
162140 TCATTACGAATTTGGGTATATCCCAAAATCTCTTCTAAGAGAAGGATTATCGTAATATTAGAGAT
66 TCATTACGAATTTGGGTATATCCCAAAATCTCTTCTAAGAGAAGGATTATCGTAATATTAGAGAT
162205 CATTTTCAGCATTTCAATCATTCTCTACAACTAAAAGGATTAATTAAAGTAATATTTAGCTAAGT
131 CATTTTCAGCATTTCAATCATTCTCTACAACTAAAAGGATTAATTAAAGTAATATTTAGCTAAGT
*
162270 TTAGCTCACATGAAGTGTTATGCAAGAATTGGTTTATATTTATAATT
196 TTAGCTCACATGAAGGGTTATGCAAGAATTGGTTTATATTTATAATT
162317 TGAATGTATATAGCATTGTCCTAAACCAATTAGCCAATATAACAATTTCATGCATAAATTCAAGA
1 TGAATGTATATAGCATTGTCCTAAACCAATTAGCCAATATAACAATTTCATGCATAAATTCAAGA
162382 TCATTACGAATTTGGGTATATCCCAAAATCTCTTCTAAGAGAAGGATTATCGTAATATTAGAGAT
66 TCATTACGAATTTGGGTATATCCCAAAATCTCTTCTAAGAGAAGGATTATCGTAATATTAGAGAT
162447 CATTTTCAGCATTTCAATCATTCTCTACAACTAAAAGGATTAATTAAAGTAATATTTAGCTAAGT
131 CATTTTCAGCATTTCAATCATTCTCTACAACTAAAAGGATTAATTAAAGTAATATTTAGCTAAGT
*
162512 TTAGCTCACATGAAGGGTTATGCAAGAATTGGTTTATATTTATATTT
196 TTAGCTCACATGAAGGGTTATGCAAGAATTGGTTTATATTTATAATT
162559 TGA
1 TGA
162562 TAGCTCAAAT
Statistics
Matches: 243, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
242 243 1.00
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.36
Consensus pattern (242 bp):
TGAATGTATATAGCATTGTCCTAAACCAATTAGCCAATATAACAATTTCATGCATAAATTCAAGA
TCATTACGAATTTGGGTATATCCCAAAATCTCTTCTAAGAGAAGGATTATCGTAATATTAGAGAT
CATTTTCAGCATTTCAATCATTCTCTACAACTAAAAGGATTAATTAAAGTAATATTTAGCTAAGT
TTAGCTCACATGAAGGGTTATGCAAGAATTGGTTTATATTTATAATT
Found at i:166047 original size:21 final size:21
Alignment explanation
Indices: 166010--166053 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
166000 TGCACGCCCG
* *
166010 GCGAGCTATCCATGGAGGAGT
1 GCGAGCTATCCAGGGAGCAGT
*
166031 GCGAGCTATCTAGGGAGCAGT
1 GCGAGCTATCCAGGGAGCAGT
166052 GC
1 GC
166054 ATGGCTCATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.23, C:0.20, G:0.39, T:0.18
Consensus pattern (21 bp):
GCGAGCTATCCAGGGAGCAGT
Found at i:166211 original size:23 final size:23
Alignment explanation
Indices: 166181--166224 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
166171 GTGCTTGCGT
166181 TGCATCCATAGCTGGGAGATTCC
1 TGCATCCATAGCTGGGAGATTCC
166204 TGCATCCATAGCTGGGAGATT
1 TGCATCCATAGCTGGGAGATT
166225 GCAGCCAAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (23 bp):
TGCATCCATAGCTGGGAGATTCC
Found at i:166687 original size:21 final size:21
Alignment explanation
Indices: 166662--166705 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
166652 AATTTAGTTA
166662 ATTAGTTTATTAGTATAAATT
1 ATTAGTTTATTAGTATAAATT
* * *
166683 ATTAGTTTGTTAGTTTAAGTT
1 ATTAGTTTATTAGTATAAATT
166704 AT
1 AT
166706 ATTATATTAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.55
Consensus pattern (21 bp):
ATTAGTTTATTAGTATAAATT
Found at i:166715 original size:28 final size:30
Alignment explanation
Indices: 166682--166744 Score: 112
Period size: 28 Copynumber: 2.2 Consensus size: 30
166672 TAGTATAAAT
166682 TATTAGTTTGTTAGTTTAAG-T-TATATTA
1 TATTAGTTTGTTAGTTTAAGTTATATATTA
166710 TATTAGTTTGTTAGTTTAAGTTATATATTA
1 TATTAGTTTGTTAGTTTAAGTTATATATTA
166740 TATTA
1 TATTA
166745 TATAAAAAAC
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 20 0.61
29 1 0.03
30 12 0.36
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (30 bp):
TATTAGTTTGTTAGTTTAAGTTATATATTA
Found at i:167237 original size:17 final size:18
Alignment explanation
Indices: 167215--167261 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
167205 ATAATTTCCA
*
167215 TTTAAAAAAATATT-GTG
1 TTTAAAAATATATTAGTG
167232 TTTAAAAATAT-TTAGTG
1 TTTAAAAATATATTAGTG
*
167249 TTTTAAAATATAT
1 TTTAAAAATATAT
167262 ATATTTTGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
16 2 0.08
17 23 0.88
18 1 0.04
ACGTcount: A:0.45, C:0.00, G:0.09, T:0.47
Consensus pattern (18 bp):
TTTAAAAATATATTAGTG
Found at i:170719 original size:49 final size:49
Alignment explanation
Indices: 170621--170763 Score: 241
Period size: 49 Copynumber: 2.9 Consensus size: 49
170611 AGTAATTATT
170621 TAGTAATGATTAGTAATAATGAAATTATTATTATTAATATTTAATGATTTGG
1 TAGTAATGATTAGTAATAAT-AAA--ATTATTATTAATATTTAATGATTTGG
170673 TAGTAATGATTAGTAATAATAAAATTATTATTAATATTTAATGATTTGG
1 TAGTAATGATTAGTAATAATAAAATTATTATTAATATTTAATGATTTGG
* *
170722 TAGTAATGATTAGTAATAATTAAATTATTGTTAATATTTAAT
1 TAGTAATGATTAGTAATAATAAAATTATTATTAATATTTAAT
170764 AATAATTTAG
Statistics
Matches: 89, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
49 66 0.74
51 3 0.03
52 20 0.22
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.46
Consensus pattern (49 bp):
TAGTAATGATTAGTAATAATAAAATTATTATTAATATTTAATGATTTGG
Found at i:170940 original size:27 final size:27
Alignment explanation
Indices: 170910--171059 Score: 112
Period size: 27 Copynumber: 5.3 Consensus size: 27
170900 CATAAAAATA
170910 ATTTAATAATGATTTTAATATTTAATG
1 ATTTAATAATGATTTTAATATTTAATG
*
170937 ATTTAGTAATGATTTTAATATTTAATG
1 ATTTAATAATGATTTTAATATTTAATG
170964 ATTTGATGATTTAGTAATGATTTTAATA-TT-ATG
1 A-TT--T-A---A-TAATGATTTTAATATTTAATG
* * *
170997 ATTTAATAATGA-TTTAGTA-ATAATC
1 ATTTAATAATGATTTTAATATTTAATG
171022 ATTATAATAATGATTTAATAATGACTTTAAT-
1 ATT-TAATAATGATTT--TAAT-A-TTTAATG
171053 ATTTAAT
1 ATTTAAT
171060 GATTTGATGA
Statistics
Matches: 100, Mismatches: 7, Indels: 29
0.74 0.05 0.21
Matches are distributed among these distances:
24 7 0.07
25 11 0.11
26 10 0.10
27 29 0.29
28 2 0.02
29 4 0.04
30 7 0.07
31 4 0.04
32 6 0.06
33 4 0.04
34 2 0.02
35 14 0.14
ACGTcount: A:0.40, C:0.01, G:0.09, T:0.49
Consensus pattern (27 bp):
ATTTAATAATGATTTTAATATTTAATG
Found at i:170975 original size:35 final size:35
Alignment explanation
Indices: 170923--171100 Score: 161
Period size: 35 Copynumber: 5.4 Consensus size: 35
170913 TAATAATGAT
170923 TTTAAT-ATTTAATGATTTAGTAATGATTTTAATA
1 TTTAATGATTTAATGATTTAGTAATGATTTTAATA
*
170957 TTTAATGATTTGATGATTTAGTAATGATTTTAATA
1 TTTAATGATTTAATGATTTAGTAATGATTTTAATA
170992 -TT-ATGATTTAATAATGATTTAGT-A--A---TAATCA
1 TTTAATGA-TT--TAATGATTTAGTAATGATTTTAAT-A
* * *
171023 -TT-AT-A-ATAATGATTTAATAATGACTTTAATA
1 TTTAATGATTTAATGATTTAGTAATGATTTTAATA
*
171054 TTTAATGATTTGATGATTTAGTAATGATTTT-ATA
1 TTTAATGATTTAATGATTTAGTAATGATTTTAATA
*
171088 -ATAATGATTTAAT
1 TTTAATGATTTAAT
171101 AATAATGATA
Statistics
Matches: 119, Mismatches: 10, Indels: 31
0.74 0.06 0.19
Matches are distributed among these distances:
26 11 0.09
27 1 0.01
29 1 0.01
30 5 0.04
31 6 0.05
32 6 0.05
33 18 0.15
34 14 0.12
35 46 0.39
36 11 0.09
ACGTcount: A:0.39, C:0.01, G:0.11, T:0.49
Consensus pattern (35 bp):
TTTAATGATTTAATGATTTAGTAATGATTTTAATA
Found at i:170986 original size:62 final size:63
Alignment explanation
Indices: 170901--171202 Score: 220
Period size: 62 Copynumber: 4.9 Consensus size: 63
170891 TCAATTAACC
* * * *
170901 ATAAAAATAATTTAATAATGATTTTAATATTTAATGATTTAGTAATGATTT-TAATATTTAATG
1 ATAATAATGATTTAATAATGATTTTAATATTTAATGATTTAATAATGATTTATAATA-ATAATG
* * * * *
170964 AT-TTGATGATTTAGTAATGATTTTAATA-TT-ATGATTTAATAATGATTTAGTAATAATCATT
1 ATAATAATGATTTAATAATGATTTTAATATTTAATGATTTAATAATGATTTA-TAATAATAATG
* * * * *
171025 ATAATAATGATTTAATAATGACTTTAATATTTAATGA-TT--TGATGATTTAGTAATGAT-TTT
1 ATAATAATGATTTAATAATGATTTTAATATTTAATGATTTAATAATGATTTA-TAATAATAATG
* * * *
171085 ATAATAATGATTTAATAAT-A--ATGATA-ATAATGATTTAATAATAATCATTATAATAATAAT-
1 ATAATAATGATTTAATAATGATTTTAATATTTAATGATTTAATAATGAT--TTATAATAATAATG
* * * * * * *
171145 TTAATAGTGATTTAGTAATGATTTT-ATA-ATAATTATTTAATAATAATTATTTAATAAT
1 ATAATAATGATTTAATAATGATTTTAATATTTAATGATTTAATAATGATT-TATAATAAT
171203 TTTTACTAAT
Statistics
Matches: 195, Mismatches: 29, Indels: 32
0.76 0.11 0.12
Matches are distributed among these distances:
56 6 0.03
57 6 0.03
59 6 0.03
60 61 0.31
61 36 0.18
62 69 0.35
63 7 0.04
64 4 0.02
ACGTcount: A:0.43, C:0.01, G:0.09, T:0.47
Consensus pattern (63 bp):
ATAATAATGATTTAATAATGATTTTAATATTTAATGATTTAATAATGATTTATAATAATAATG
Found at i:171017 original size:14 final size:13
Alignment explanation
Indices: 170978--171202 Score: 111
Period size: 14 Copynumber: 17.1 Consensus size: 13
170968 GATGATTTAG
170978 TAATGATTT-TAA
1 TAATGATTTATAA
170990 TATTATGA-TT-TAA
1 TA--ATGATTTATAA
171003 TAATGATTTAGTAA
1 TAATGATTTA-TAA
*
171017 TAATCA-TTATAA
1 TAATGATTTATAA
171029 TAATGA-TT-TAA
1 TAATGATTTATAA
*
171040 TAATGACTTTAATATT
1 TAATGA-TTT-ATA-A
171056 TAATGATTTGATGATTTA
1 TAATGATTT-AT-A---A
171074 GTAATGATTTTATAA
1 -TAATGA-TTTATAA
171089 TAATGATTTAATAA
1 TAATGATTT-ATAA
171103 TAATG----ATAA
1 TAATGATTTATAA
171112 TAATGATTTAATAA
1 TAATGATTT-ATAA
*
171126 TAATCA-TTATAA
1 TAATGATTTATAA
*
171138 TAAT-AATT-TAA
1 TAATGATTTATAA
* *
171149 TAGTGA-TT-TAG
1 TAATGATTTATAA
171160 TAATGATTTTATAA
1 TAATGA-TTTATAA
*
171174 TAATTATTTAATAA
1 TAATGATTT-ATAA
*
171188 TAATTATTTAATAA
1 TAATGATTT-ATAA
171202 T
1 T
171203 TTTTACTAAT
Statistics
Matches: 175, Mismatches: 11, Indels: 52
0.74 0.05 0.22
Matches are distributed among these distances:
9 9 0.05
11 29 0.17
12 25 0.14
13 22 0.13
14 62 0.35
15 8 0.05
16 7 0.04
18 2 0.01
19 8 0.05
20 3 0.02
ACGTcount: A:0.44, C:0.01, G:0.08, T:0.47
Consensus pattern (13 bp):
TAATGATTTATAA
Found at i:171042 original size:11 final size:11
Alignment explanation
Indices: 170910--171188 Score: 117
Period size: 11 Copynumber: 23.9 Consensus size: 11
170900 CATAAAAATA
170910 ATTTAATAATG
1 ATTTAATAATG
170921 ATTT--TAAT-
1 ATTTAATAATG
170929 A-TT--TAATG
1 ATTTAATAATG
*
170937 ATTTAGTAATG
1 ATTTAATAATG
170948 ATTT--TAAT-
1 ATTTAATAATG
170956 ATTTAATGATTTGATG
1 ATTTAAT-A----ATG
*
170972 ATTTAGTAATG
1 ATTTAATAATG
170983 ATTTTAATATTATG
1 A-TTTAATA--ATG
170997 ATTTAATAATG
1 ATTTAATAATG
*
171008 ATTTAGTAATAATC
1 A-TT--TAATAATG
171022 ATTATAATAATG
1 ATT-TAATAATG
171034 ATTTAATAATG
1 ATTTAATAATG
* *
171045 ACTTTAATATTT
1 A-TTTAATAATG
* * * *
171057 AATGATTTGATG
1 ATTTA-ATAATG
*
171069 ATTTAGTAATG
1 ATTTAATAATG
171080 ATTTTATAATAATG
1 A--TT-TAATAATG
*
171094 ATTTAATAATA
1 ATTTAATAATG
*
171105 ATGATAATAATG
1 AT-TTAATAATG
*
171117 ATTTAATAATAATC
1 A-TT--TAATAATG
*
171131 ATTATAATAATA
1 ATT-TAATAATG
*
171143 ATTTAATAGTG
1 ATTTAATAATG
*
171154 ATTTAGTAATG
1 ATTTAATAATG
*
171165 ATTTTATAATAATT
1 A--TT-TAATAATG
171179 ATTTAATAAT
1 ATTTAATAAT
171189 AATTATTTAA
Statistics
Matches: 208, Mismatches: 30, Indels: 60
0.70 0.10 0.20
Matches are distributed among these distances:
7 6 0.03
8 6 0.03
9 10 0.05
10 1 0.00
11 70 0.34
12 55 0.26
13 16 0.08
14 35 0.17
15 3 0.01
16 6 0.03
ACGTcount: A:0.42, C:0.01, G:0.09, T:0.48
Consensus pattern (11 bp):
ATTTAATAATG
Found at i:171071 original size:86 final size:86
Alignment explanation
Indices: 170932--171126 Score: 209
Period size: 97 Copynumber: 2.2 Consensus size: 86
170922 TTTTAATATT
* *
170932 TAATGATTTAGTAATGATTTTAATATTTAATGATTTGATGATTTAGTAATGATTTTAATATTATG
1 TAATGATTTAATAATGACTTTAATATTTAATGATTTGATGATTTA-TAATGA--TT-AT-TTA--
* * *
170997 ATTTAATAATGATTTAGTAATAATCATTA
59 A-TTAATAATGATTTAATAATAATGATAA
171026 TAATAATGATTTAATAATGACTTTAATATTTAATGATTTGATGATTTAGTAATGA-T-TTT-A-T
1 TAAT---GATTTAATAATGACTTTAATATTTAATGATTTGATGATTTA-TAATGATTATTTAATT
171087 AATAATGATTTAATAATAATGATAA
62 AATAATGATTTAATAATAATGATAA
171112 TAATGATTTAATAAT
1 TAATGATTTAATAAT
171127 AATCATTATA
Statistics
Matches: 93, Mismatches: 5, Indels: 17
0.81 0.04 0.15
Matches are distributed among these distances:
83 11 0.12
86 27 0.29
88 1 0.01
91 2 0.02
92 1 0.01
94 5 0.05
97 46 0.49
ACGTcount: A:0.41, C:0.01, G:0.11, T:0.47
Consensus pattern (86 bp):
TAATGATTTAATAATGACTTTAATATTTAATGATTTGATGATTTATAATGATTATTTAATTAATA
ATGATTTAATAATAATGATAA
Done.