Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004020.1 Hibiscus syriacus cultivar Beakdansim tig00008781_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70976

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6331--6380
24
2.1
24
85
7
66
56
2
0
42
1.11
6433--6507
30
2.6
29
81
12
82
53
0
0
46
1.00
6429--6500
14
4.8
16
70
17
57
56
0
0
43
0.99
6941--6974
18
1.9
17
94
5
59
58
0
0
41
0.98
8171--8202
15
2.1
15
94
0
55
43
0
3
53
1.16
9537--9632
15
6.4
15
68
21
67
12
3
8
76
1.13
9541--9575
18
1.9
18
88
11
54
5
0
14
80
0.89
9593--9637
16
2.7
16
89
6
63
13
2
8
75
1.13
9609--9650
17
2.6
16
82
14
50
16
7
4
71
1.26
13506--13536
15
2.1
15
100
0
62
38
6
35
19
1.77
14495--14602
54
2.0
54
98
0
207
29
32
14
23
1.94
22096--22137
2
22.0
2
85
9
61
45
0
2
52
1.13
23447--23507
2
30.5
2
93
0
104
47
1
1
49
1.21
23505--23541
18
2.1
18
100
0
74
16
10
5
67
1.38
23533--23602
9
7.7
9
73
20
56
14
0
5
80
0.89
23515--23616
44
2.3
44
83
11
120
14
2
5
76
1.09
29603--29837
117
2.0
117
100
0
470
27
23
19
29
1.98
31185--31237
17
3.1
17
76
10
54
52
1
3
41
1.30
32657--32754
3
31.7
3
82
13
119
65
0
1
33
1.00
32977--33286
124
2.5
123
88
2
453
26
19
14
39
1.90
33224--33718
113
4.6
107
93
4
699
28
19
14
37
1.91
33392--33757
113
3.2
113
96
0
662
28
19
15
36
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35265--35347
17
4.8
17
81
12
107
0
14
0
85
0.60
35255--35347
32
3.1
30
83
11
111
0
15
0
84
0.61
35269--35342
26
2.9
25
94
6
130
0
13
0
86
0.57
35270--35353
5
16.8
5
76
21
79
1
14
0
84
0.68
35267--35347
1
81.0
1
72
0
63
0
13
0
86
0.57
35256--35359
9
11.0
10
75
20
84
0
16
0
82
0.72
42682--42713
15
2.1
15
94
0
55
46
9
18
25
1.79
45903--45946
20
2.2
20
95
0
79
20
9
34
36
1.84
46812--46853
17
2.4
18
76
4
50
50
2
4
42
1.36
48271--48357
3
27.7
3
80
17
97
66
0
0
33
0.92
48276--48357
18
4.6
18
87
7
114
67
0
0
32
0.91
52114--52163
3
17.7
3
82
12
61
64
0
34
2
1.05
52086--52163
25
3.2
26
84
12
94
65
0
30
3
1.10
54450--54493
3
14.3
3
95
4
79
34
0
0
65
0.93
65485--65552
26
2.6
26
100
0
136
48
4
0
47
1.22
65491--65547
15
4.1
15
73
17
59
49
3
0
47
1.18
66789--66832
17
2.6
16
82
13
52
13
2
4
79
0.98
66784--66835
7
7.0
7
80
10
50
15
1
3
78
0.98
67952--68004
27
2.0
27
96
0
97
37
11
28
22
1.89
69614--69672
31
1.9
31
85
0
82
35
15
22
27
1.94

Tables:   1

The End!