genome.fa.s4021.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004021.1 Hibiscus syriacus cultivar Beakdansim tig00008782_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58911

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1724--1759	15	2.5	15	95	4	65	41	0	33	25	1.55
2523--2554	15	2.1	15	94	0	55	25	18	9	46	1.79
6340--6370	9	3.6	9	91	8	55	22	22	0	54	1.44
9902--9972	36	1.9	37	83	8	92	70	0	19	9	1.15
10334--10380	18	2.5	19	82	10	60	25	4	6	63	1.36
11487--12283	113	7.0	112	85	5	922	38	15	18	27	1.91
11491--12278	227	3.5	224	84	7	957	38	15	18	27	1.91
12066--12361	125	2.4	124	85	3	402	41	13	17	27	1.87
12610--12688	32	2.5	31	79	6	77	39	1	0	59	1.06
12618--12681	20	3.5	19	76	22	73	40	0	0	59	0.97
12610--12668	3	19.7	3	85	13	77	35	0	0	64	0.94
15343--15370	12	2.3	12	100	0	56	53	32	0	14	1.41
15482--15533	24	2.2	24	85	0	68	23	17	23	36	1.95
17819--17854	18	2.0	18	88	0	54	52	25	2	19	1.59
18262--18298	14	2.6	14	86	0	56	48	24	0	27	1.51
19737--19831	21	4.5	21	77	4	84	24	15	35	24	1.94
19713--19835	42	2.9	41	82	7	140	24	17	35	22	1.95
21540--21571	14	2.3	14	94	0	55	50	21	21	6	1.71
21957--22014	22	2.7	21	86	5	55	24	13	43	18	1.87
21964--22014	22	2.3	22	93	0	84	21	15	43	19	1.88
22174--22269	20	4.8	20	76	6	104	22	14	21	40	1.90
22174--22297	20	6.2	20	77	10	94	20	13	22	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22318--22383	21	3.1	21	95	0	114	37	15	24	22	1.92
24421--24479	3	19.7	3	100	0	118	33	0	0	66	0.92
24808--24864	27	2.1	27	100	0	114	43	10	7	38	1.66
39450--39518	2	35.0	2	97	2	131	50	0	0	49	1.00
41114--42034	134	6.9	134	85	2	1068	31	23	15	29	1.96
41114--42034	269	3.5	263	82	3	1049	31	23	15	29	1.96
41924--42125	92	2.2	91	83	3	246	33	23	14	28	1.94
41789--42259	223	2.1	226	88	3	700	32	23	15	28	1.95
42246--42341	41	2.3	41	89	0	147	32	16	26	25	1.96
42518--42554	19	1.9	19	88	0	56	37	2	2	56	1.28
49918--49958	8	5.2	8	88	5	66	36	0	26	36	1.57
49918--49958	15	2.6	16	84	7	66	36	0	26	36	1.57
50038--50492	128	3.6	128	95	0	815	21	23	21	33	1.97

Tables:   1

The End!