genome.fa.s4022.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004022.1 Hibiscus syriacus cultivar Beakdansim tig00008783_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  155348

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1211--1241	8	3.9	8	91	0	53	25	12	25	35	1.92
9074--9115	22	1.9	22	85	9	59	66	11	11	9	1.44
9897--10099	99	2.1	99	99	0	397	34	15	18	31	1.93
12408--12451	22	2.0	22	86	0	61	54	15	9	20	1.68
12492--12538	23	2.0	23	83	0	58	42	23	17	17	1.88
12501--12544	23	1.9	23	85	0	61	40	20	18	20	1.91
21808--21869	19	3.2	19	80	11	63	19	20	29	30	1.97
21808--21869	10	6.3	10	75	15	58	19	20	29	30	1.97
21834--21875	19	2.2	19	83	8	50	19	30	30	19	1.96
21870--21912	5	8.2	5	85	10	50	18	53	20	6	1.67
21872--21920	22	2.2	22	96	0	89	18	46	22	12	1.82
28354--28395	20	2.0	20	86	4	57	35	33	9	21	1.86
28742--28814	36	2.0	36	84	10	96	49	4	1	45	1.29
30323--30386	32	2.0	32	93	0	110	29	23	3	43	1.69
44406--44461	7	8.0	7	100	0	112	57	0	28	14	1.38
47806--47879	23	3.2	23	76	0	76	36	21	21	20	1.95
52912--52977	23	2.9	23	86	0	87	31	24	25	18	1.97
57414--57460	21	2.2	21	100	0	94	21	14	21	42	1.88
57998--58029	2	16.0	2	100	0	64	50	0	0	50	1.00
67127--67163	2	18.5	2	100	0	74	48	0	0	51	1.00
67526--67630	51	2.1	51	92	0	174	39	9	20	31	1.84
72147--72197	22	2.4	22	81	12	61	31	11	5	50	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72609--72654	21	2.2	21	100	0	92	26	0	28	45	1.54
97413--97558	71	2.1	70	89	5	231	39	8	4	47	1.52
97843--97875	6	5.8	6	89	10	52	30	0	0	69	0.88
97911--97953	20	2.2	20	91	0	68	20	18	18	41	1.90
98316--98340	13	1.9	13	100	0	50	32	4	0	64	1.12
100944--100999	23	2.4	23	74	11	60	35	23	23	17	1.95
102541--102664	63	2.0	62	87	4	178	33	20	18	27	1.96
102540--102667	31	4.1	31	79	9	143	34	21	17	26	1.96
104031--104075	21	2.1	21	87	0	63	15	24	28	31	1.96
110640--110683	21	2.1	21	84	12	56	47	9	0	43	1.35
120082--120150	5	12.0	5	75	24	57	17	52	20	10	1.73
120082--120156	18	4.2	18	96	0	141	17	50	20	12	1.77
122607--122738	48	2.8	48	76	13	137	21	16	18	42	1.89
122624--122738	24	4.8	24	88	6	162	22	17	19	40	1.91
122675--122747	24	3.0	24	86	4	76	21	16	17	43	1.87
124909--124977	5	12.0	5	75	24	57	17	52	20	10	1.73
124909--124983	18	4.2	18	96	0	141	17	50	20	12	1.77
124975--125021	7	6.4	7	90	9	76	12	34	27	25	1.92
124972--125020	15	3.3	15	100	0	98	14	34	26	24	1.94
124976--125021	22	2.1	22	92	8	76	13	32	28	26	1.93
127457--127588	48	2.8	48	76	13	137	21	16	18	42	1.89
127474--127588	24	4.8	24	88	6	162	22	17	19	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127525--127597	24	3.0	24	86	4	76	21	16	17	43	1.87
136367--136427	4	16.0	4	78	10	56	26	1	24	47	1.61
151354--151384	15	2.1	15	100	0	62	29	12	12	45	1.80
151388--151516	10	12.5	10	66	21	61	56	17	13	13	1.67
151388--151464	33	2.3	34	86	6	104	55	18	14	11	1.68
152363--152405	2	21.5	2	95	0	77	48	0	2	48	1.14
153553--153891	168	2.0	168	87	7	494	39	3	9	47	1.52

Tables:   1

The End!