Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004025.1 Hibiscus syriacus cultivar Beakdansim tig00008792_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55508

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4880--4923
21
2.0
22
82
4
54
45
0
6
47
1.29
5212--5267
16
3.2
16
71
28
51
66
1
5
26
1.23
5212--5282
37
1.9
37
83
11
92
67
1
5
25
1.20
6624--6673
12
3.8
13
80
14
59
58
0
0
42
0.98
6636--6680
3
15.0
3
90
0
72
62
0
0
37
0.96
6624--6679
15
3.5
17
81
16
66
58
0
0
41
0.98
8869--8917
3
16.3
3
100
0
98
32
0
0
67
0.91
9820--9941
37
3.3
37
97
0
226
35
7
27
29
1.84
14614--14702
36
2.4
36
88
1
133
35
5
29
29
1.80
18342--18401
15
3.7
15
71
16
57
41
3
3
51
1.35
19520--19573
22
2.5
22
93
0
90
50
1
16
31
1.56
26563--26622
23
2.6
24
81
5
61
20
26
26
26
1.99
32020--32078
29
2.0
30
83
9
77
38
8
11
40
1.72
32353--32406
23
2.4
22
81
9
63
14
25
27
31
1.95
37802--37860
29
2.0
30
83
9
77
38
8
11
40
1.72
38135--38188
23
2.4
22
81
9
63
14
25
27
31
1.95
43580--43638
29
2.0
30
83
9
77
38
8
11
40
1.72
43913--43966
23
2.4
22
81
9
63
14
25
27
31
1.95
54496--54523
12
2.3
12
100
0
56
50
0
7
42
1.30

Tables:   1

The End!