genome.fa.s4026.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004026.1 Hibiscus syriacus cultivar Beakdansim tig00008795_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129688

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116--204	42	2.1	42	80	0	106	21	38	16	23	1.93
1543--1576	13	2.6	14	86	13	54	32	0	26	41	1.56
1759--1882	32	3.9	32	79	13	139	16	23	19	41	1.90
1752--1881	64	2.0	65	90	1	208	17	23	19	40	1.92
4367--4411	23	2.0	23	90	0	72	31	22	20	26	1.98
5457--5494	20	1.9	20	88	0	58	39	21	21	18	1.93
5513--5580	19	3.8	19	85	12	92	13	20	17	48	1.80
5494--5608	52	2.2	52	80	0	122	19	20	20	39	1.93
5697--5733	14	2.6	14	86	0	56	48	21	0	29	1.50
7582--7626	20	2.3	20	92	3	74	33	26	24	15	1.95
8154--8198	18	2.5	18	88	0	72	13	15	44	26	1.83
9518--9560	20	2.2	20	82	0	50	51	20	16	11	1.75
10036--10150	20	5.7	19	76	9	77	24	17	24	33	1.96
10139--10231	20	4.5	21	75	4	91	17	23	18	40	1.90
10078--10208	41	3.2	41	81	4	131	19	21	21	38	1.94
10139--10231	41	2.3	41	98	0	177	17	23	18	40	1.90
11274--11308	15	2.3	15	100	0	70	22	37	5	34	1.78
11578--11687	57	1.9	57	90	0	175	22	20	17	40	1.92
26310--26343	17	2.0	17	88	11	52	41	11	8	38	1.73
26403--26461	25	2.4	25	97	0	109	25	23	25	25	2.00
26401--26461	12	4.8	13	82	6	81	24	24	26	24	2.00
30170--30218	22	2.2	22	85	0	71	30	24	22	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33413--33437	2	12.5	2	100	0	50	48	0	0	52	1.00
33493--33607	2	58.5	2	73	16	89	49	5	3	41	1.42
34967--35002	13	2.8	13	87	4	56	61	0	0	38	0.96
34968--34998	16	1.9	16	100	0	62	58	0	0	41	0.98
35220--35760	111	4.9	111	87	2	712	29	15	23	31	1.95
35231--35760	222	2.4	223	89	1	814	29	15	23	31	1.95
35761--35929	79	2.1	79	82	4	207	27	18	23	30	1.98
35898--35984	34	2.6	34	96	0	156	28	19	21	29	1.98
37279--37370	12	7.8	12	71	16	66	47	18	15	18	1.82
37275--37370	24	4.0	23	82	8	104	47	17	14	19	1.82
37277--37367	47	1.9	48	84	10	125	48	17	15	18	1.82
37273--37384	24	4.7	26	74	14	98	47	16	16	19	1.83
38937--38975	18	2.1	18	85	4	51	35	15	2	46	1.60
39819--39879	13	4.3	13	73	18	59	18	19	44	18	1.87
39825--39865	18	2.3	18	95	0	73	14	19	46	19	1.84
39819--39881	31	2.0	31	87	0	90	17	19	46	17	1.85
42392--42987	300	2.0	300	96	0	1093	30	18	14	36	1.91
47916--47940	9	2.8	9	100	0	50	48	8	8	36	1.62
49313--49340	13	2.2	13	100	0	56	64	0	0	35	0.94
56600--56712	60	1.9	60	87	3	165	37	13	12	37	1.82
58412--58536	39	3.3	37	77	13	121	41	8	15	35	1.76
59242--59275	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60005--60076	8	9.0	8	71	21	53	69	1	2	26	1.10
60018--60078	16	3.9	16	81	10	72	70	1	1	26	1.06
60468--60493	2	13.0	2	100	0	52	50	0	0	50	1.00
61712--61747	19	1.9	19	88	5	56	69	8	13	8	1.36
62751--62784	16	2.1	17	88	5	52	76	5	8	8	1.15
64704--64921	113	1.9	112	87	3	321	30	18	20	30	1.96
78497--78550	27	2.0	27	82	13	67	51	14	5	27	1.64
83821--83860	21	1.9	21	100	0	80	27	22	15	35	1.94
86066--86141	34	2.2	34	90	4	127	11	13	40	34	1.81
86084--86136	16	3.2	16	69	10	52	9	9	45	35	1.69
88319--88411	3	31.3	3	79	14	104	36	0	0	63	0.95
88317--88412	50	1.9	51	87	10	144	37	0	0	62	0.95
92411--92447	17	2.2	17	95	0	65	81	5	10	2	0.96
93550--93750	64	3.1	65	77	12	184	29	15	13	41	1.86
93668--93852	102	1.8	101	81	10	234	28	19	11	40	1.87
93852--94118	131	2.0	131	83	9	332	25	32	17	23	1.97
95892--96049	30	5.2	30	78	8	140	14	14	10	60	1.58
96990--97046	22	2.4	22	85	11	69	47	1	1	49	1.22
102588--102622	15	2.3	15	90	0	52	20	17	17	45	1.85
103396--103449	19	2.8	19	82	2	63	35	16	11	37	1.84
104627--104680	21	2.8	19	78	13	65	51	11	9	27	1.67
104801--104896	21	4.9	19	85	11	124	51	9	10	29	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104801--104896	39	2.5	39	98	0	183	51	9	10	29	1.67
107987--108126	20	6.8	20	86	8	174	20	18	37	22	1.94
118883--119003	60	2.0	60	88	3	181	29	22	9	38	1.86
121886--121910	3	8.3	3	100	0	50	64	0	0	36	0.94
122767--122908	40	3.6	39	66	17	98	59	1	5	33	1.30
122883--122947	2	34.5	2	88	11	102	50	0	0	49	1.00
129381--129455	21	3.6	21	77	0	78	30	20	18	30	1.96

Tables:   1

The End!