Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004027.1 Hibiscus syriacus cultivar Beakdansim tig00008797_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85447

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
150--340
74
2.7
72
84
10
223
29
21
15
33
1.94
6039--6078
20
2.0
20
85
0
53
62
7
10
20
1.50
6031--6103
34
2.1
35
87
2
103
61
10
10
16
1.56
6174--6214
6
6.0
7
83
16
59
56
12
17
14
1.68
10351--10417
3
21.7
3
81
6
80
59
0
2
37
1.13
11675--11729
22
2.5
22
88
8
78
25
29
16
29
1.97
13162--13204
19
2.3
19
95
0
77
13
34
23
27
1.93
15093--15163
36
2.0
36
83
5
90
23
19
22
33
1.97
21071--21130
31
1.9
31
93
0
102
35
8
28
28
1.86
23394--23529
38
3.5
38
82
5
157
33
22
1
41
1.63
24869--24908
15
2.7
15
88
3
55
35
22
17
25
1.95
25525--25587
3
21.0
3
90
6
101
34
0
0
65
0.93
26505--26579
29
2.5
30
80
14
91
33
5
4
57
1.40
26817--26889
16
4.1
17
71
25
53
26
4
4
65
1.28
27293--27320
2
14.0
2
100
0
56
50
0
0
50
1.00
27840--27922
25
3.4
24
79
17
82
31
2
0
66
1.05
27819--27888
28
2.5
28
80
13
83
34
4
0
61
1.16
34980--35015
9
4.0
9
85
0
54
22
16
0
61
1.35
38497--38522
7
3.7
7
100
0
52
76
0
11
11
1.01
38867--38925
22
2.7
23
87
7
63
30
11
3
54
1.53
38875--38925
22
2.4
22
93
3
86
29
9
1
58
1.41
39177--39222
20
2.3
20
88
0
74
32
13
23
30
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39560--39622
22
2.9
22
87
0
90
36
14
12
36
1.84
39813--40492
118
5.7
118
84
4
780
39
16
17
26
1.90
39813--40492
237
2.9
235
83
6
811
39
16
17
26
1.90
40900--40981
3
28.0
3
92
4
132
36
0
0
63
0.95
40900--40981
32
2.6
32
96
0
146
36
0
0
63
0.95
42712--42742
2
16.0
2
93
6
55
51
0
0
48
1.00
50269--50315
8
6.1
8
80
9
62
12
27
17
42
1.85
50275--50315
15
2.7
15
100
0
82
14
26
19
39
1.90
67259--67295
14
2.5
15
95
4
67
54
10
0
35
1.36
74418--74924
202
2.5
201
82
2
615
33
22
9
33
1.87
74449--74924
201
2.4
202
83
2
598
34
22
9
33
1.87
84472--84499
14
2.0
14
100
0
56
85
0
14
0
0.59
84584--84643
30
2.0
31
84
12
81
65
5
8
21
1.40

Tables:   1

The End!