genome.fa.s4029.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004029.1 Hibiscus syriacus cultivar Beakdansim tig00008802_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61143

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4517--4552	2	18.0	2	94	0	63	47	2	0	50	1.15
13099--13136	20	1.9	20	88	0	58	44	13	5	36	1.66
14873--14918	19	2.4	19	96	0	83	15	26	6	52	1.67
15014--15071	23	2.5	23	94	0	98	37	8	18	34	1.82
16192--16249	23	2.5	23	94	0	98	37	8	18	34	1.82
18346--18409	21	3.0	21	84	11	85	23	25	21	29	1.99
18993--19030	20	1.9	20	94	0	67	23	21	26	28	1.99
20479--20623	71	2.1	68	82	7	170	21	7	13	57	1.60
27652--27744	21	4.5	21	78	4	100	39	18	24	17	1.91
27652--27744	41	2.3	41	100	0	186	39	18	24	17	1.91
27671--27805	41	3.3	41	82	6	132	38	20	21	19	1.94
27730--27780	20	2.5	20	77	3	57	45	19	15	19	1.86
28326--28373	19	2.5	19	77	12	53	45	27	16	10	1.80
28369--28553	19	10.1	19	75	14	156	12	21	21	44	1.84
28369--28553	33	5.1	38	76	13	156	12	21	21	44	1.84
28507--28553	20	2.3	20	79	13	60	12	25	14	46	1.80
30605--30671	21	3.2	21	66	6	55	23	35	20	19	1.95
32030--32065	14	2.6	14	95	0	63	30	0	25	44	1.54
32224--32392	19	9.7	19	72	18	152	15	21	18	43	1.87
32228--32392	33	4.8	33	83	8	206	15	21	18	43	1.87
32268--32391	66	1.9	66	96	0	230	16	22	19	41	1.89
34693--34717	12	2.1	12	100	0	50	0	28	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37662--37767	19	5.9	18	76	16	103	42	23	21	12	1.87
37645--37778	39	3.6	37	69	18	102	42	25	19	12	1.86
37734--37778	18	2.4	18	88	3	63	46	26	17	8	1.78
37774--37855	18	4.6	19	79	14	95	12	20	20	46	1.83
37840--37894	20	2.8	19	83	8	65	16	23	23	36	1.94
38376--38411	18	2.0	18	88	0	54	13	13	47	25	1.80
39729--39766	20	1.9	20	88	0	58	50	21	15	13	1.78
39793--39843	19	2.7	19	96	0	93	9	23	25	41	1.85
40280--40373	20	4.7	20	80	2	89	23	18	24	34	1.96
40300--40377	41	1.9	41	86	0	111	21	16	21	39	1.92
40260--40374	20	5.7	20	78	5	88	23	17	23	35	1.95
40363--40496	20	6.5	21	75	4	130	17	23	17	41	1.90
40363--40496	41	3.3	41	97	0	232	17	23	17	41	1.90
40343--40496	82	1.9	82	89	5	240	18	23	18	39	1.92
41487--41527	21	2.0	21	85	0	55	29	29	19	21	1.98
42097--42131	18	1.9	18	88	11	54	31	34	17	17	1.93
45771--45804	13	2.6	13	85	0	50	44	8	2	44	1.50
49748--49814	32	2.1	32	100	0	134	50	8	11	28	1.69
50683--50737	21	2.7	21	88	2	76	43	21	16	18	1.88
50880--50930	19	2.6	19	84	9	68	21	11	29	37	1.89
52300--52378	40	2.0	40	85	2	106	17	24	7	50	1.72
54362--54399	14	2.6	15	83	8	51	31	2	0	65	1.06

Tables:   1

The End!