Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000403.1 Hibiscus syriacus cultivar Beakdansim tig00000744_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136712

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2732--2759
12
2.3
12
100
0
56
7
0
7
85
0.73
2731--2773
21
2.0
21
86
8
61
11
4
6
76
1.13
5956--6016
2
31.0
2
74
9
54
45
6
3
44
1.46
7452--8097
55
11.7
55
86
4
751
32
24
16
27
1.96
7452--8097
165
3.9
164
88
4
849
32
24
16
27
1.96
9352--9422
16
4.3
15
74
22
61
5
18
0
76
0.98
9371--9395
7
3.6
7
100
0
50
12
12
0
76
1.04
9358--9435
14
5.5
14
74
21
65
5
17
0
76
0.96
15995--16124
45
2.8
48
79
12
126
33
21
13
31
1.91
27023--27056
17
2.1
16
88
5
50
64
2
0
32
1.08
31430--31474
23
2.0
23
86
0
63
26
8
6
57
1.54
31937--31985
25
1.9
26
83
4
64
63
4
0
32
1.13
33002--33133
69
1.9
69
85
0
183
29
21
19
29
1.98
40605--40707
3
34.7
3
86
1
145
32
0
0
66
0.98
42114--42160
22
2.1
22
84
0
58
38
2
2
57
1.23
54645--55008
52
7.0
52
93
2
624
24
15
22
37
1.93
55645--56278
119
5.4
117
96
2
1059
35
15
20
28
1.93
56433--56535
3
34.7
3
90
1
163
33
0
0
65
1.00
57933--57982
24
2.1
23
81
3
55
38
2
2
58
1.21
60060--60145
32
2.7
33
71
8
79
11
32
27
27
1.92
70426--70470
21
2.1
21
84
8
56
60
11
0
28
1.31
80986--81017
16
1.9
17
93
6
57
34
12
12
40
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
81152--81204
28
1.9
27
85
11
72
30
18
11
39
1.86
81570--81607
16
2.4
17
91
8
62
34
13
0
52
1.40
82390--82470
37
2.2
38
80
13
96
50
2
1
45
1.22
91441--91633
96
2.0
96
100
0
386
40
17
10
31
1.83
91684--91765
31
2.6
32
73
7
87
29
30
24
15
1.96
96633--96687
19
2.9
18
75
19
58
38
0
7
54
1.28
98353--98885
272
2.0
272
98
0
1021
33
11
24
31
1.90
99972--100039
29
2.3
29
100
0
136
26
25
38
10
1.88
101426--101501
28
2.8
28
86
9
120
31
17
5
46
1.70
105087--105254
60
2.8
60
85
3
205
29
22
4
42
1.74
110347--110384
2
19.0
2
94
0
67
52
0
0
47
1.00
110871--110913
18
2.5
17
81
7
52
65
2
6
25
1.30
112062--112511
105
4.3
105
92
2
712
21
18
27
32
1.97
113115--113272
68
2.4
65
82
4
199
36
9
22
32
1.86
113115--113298
65
2.8
66
80
6
201
37
9
21
31
1.85
113247--113473
36
6.5
36
74
12
161
39
14
18
27
1.90
113259--113351
37
2.6
36
87
1
123
40
17
20
21
1.91
113196--113455
138
1.9
138
84
1
351
39
13
19
26
1.89
114375--114418
22
2.0
22
91
8
72
27
11
22
38
1.88
115023--115069
11
4.3
11
80
20
53
0
8
6
85
0.75
115016--115069
24
2.2
24
87
6
74
0
11
5
83
0.80
115032--115063
13
2.5
13
100
0
64
0
6
6
87
0.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
115041--115083
18
2.4
18
84
3
52
2
13
4
79
1.00
116247--116285
8
5.0
8
84
6
53
58
12
17
10
1.61
116247--116285
15
2.5
15
87
4
51
58
12
17
10
1.61
116806--116845
18
2.2
18
100
0
80
35
12
32
20
1.90
118764--118815
27
1.9
27
88
0
77
69
5
9
15
1.35
118876--118923
2
24.0
2
95
0
87
52
0
0
47
1.00
119402--119444
18
2.5
17
81
7
52
65
2
6
25
1.30
120791--120831
21
2.0
20
86
9
57
34
2
9
53
1.47
121129--121168
12
3.6
12
83
12
50
45
5
0
50
1.23
121155--121412
22
11.7
22
89
3
306
42
0
6
50
1.34
121433--121491
31
1.9
31
89
0
91
45
8
3
42
1.51
130127--130182
24
2.3
24
96
0
103
41
17
5
35
1.73
133319--133392
27
2.7
27
85
2
85
36
25
10
27
1.89
133385--133472
28
3.1
28
96
0
158
45
11
13
29
1.79
135403--135777
183
2.0
183
90
3
585
46
9
2
41
1.49
135712--135749
16
2.4
17
86
8
53
36
0
0
63
0.95
135913--135941
15
1.9
15
100
0
58
17
6
27
48
1.72

Tables:   1

The End!