genome.fa.s4030.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004030.1 Hibiscus syriacus cultivar Beakdansim tig00008803_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100539

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3708--3991	2	143.0	2	69	16	173	46	3	2	47	1.31
3838--3950	13	8.5	13	68	16	70	48	1	2	46	1.26
3747--4022	146	1.9	150	87	5	409	46	4	2	46	1.37
3977--4038	18	3.2	18	75	16	61	45	11	4	38	1.61
4083--4151	11	6.5	11	73	6	54	46	2	2	47	1.32
4127--4249	17	6.5	18	69	21	56	47	3	5	43	1.43
4252--4480	41	5.5	40	73	16	157	54	2	9	34	1.46
4350--4514	7	23.9	7	67	23	52	57	1	6	34	1.34
4570--4613	22	2.0	23	82	13	56	47	9	4	38	1.56
4656--4702	20	2.2	22	85	7	62	42	0	6	51	1.27
4771--4806	17	2.2	16	90	5	54	50	8	0	41	1.33
4733--4855	64	1.9	62	82	12	151	47	2	4	46	1.34
4836--4902	9	7.7	9	75	20	54	59	1	1	37	1.16
4944--5185	8	33.1	8	69	21	92	53	2	8	35	1.46
5101--5185	45	1.9	44	86	9	120	55	2	7	35	1.40
5115--5172	30	1.9	30	86	10	82	55	3	6	34	1.44
5210--5240	16	1.9	16	100	0	62	38	9	0	51	1.35
5268--5407	2	69.0	2	67	23	62	44	2	5	48	1.36
5261--5332	21	3.4	21	68	11	58	47	2	6	43	1.45
5284--5343	28	2.2	27	82	11	77	46	1	8	43	1.43
5320--5377	18	3.2	17	86	11	80	36	5	1	56	1.32
5322--5558	8	29.5	8	67	17	66	38	5	3	52	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5434--5487	22	2.4	23	84	9	67	31	7	1	59	1.36
5505--5552	14	3.7	14	81	15	59	43	4	0	52	1.20
5614--5662	14	3.5	13	84	13	62	46	2	0	51	1.12
5633--5659	2	13.5	2	100	0	54	48	0	0	51	1.00
5964--6009	24	1.9	24	91	8	76	36	10	0	52	1.37
6109--6144	2	18.0	2	88	0	54	44	0	5	50	1.25
6097--6143	14	3.4	14	87	0	58	44	0	8	46	1.33
6749--6805	23	2.5	23	91	0	87	43	8	14	33	1.76
6632--6882	85	2.9	87	92	2	420	41	11	13	32	1.82
6899--7796	200	4.5	195	82	7	1019	31	15	14	38	1.87
11001--11767	201	3.8	200	85	3	942	32	15	13	37	1.87
12063--12114	11	4.5	11	77	13	59	48	7	7	36	1.61
13093--13145	6	8.8	6	85	0	52	28	28	1	41	1.67
13093--13145	18	2.9	18	86	5	63	28	28	1	41	1.67
14611--16195	200	7.8	198	78	7	1415	32	17	14	35	1.90
15339--15390	21	2.5	21	100	0	104	32	17	13	36	1.89
15139--15590	221	2.0	221	91	0	726	32	18	14	35	1.91
14654--16189	401	3.8	400	81	8	1331	32	17	14	36	1.90
16537--16585	19	2.6	19	93	0	80	53	10	4	32	1.54
18018--18073	18	3.2	18	94	2	96	1	41	0	57	1.09
18235--18275	21	2.0	21	90	0	64	26	43	2	26	1.67
18256--18388	33	4.0	33	98	0	239	24	45	0	29	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18547--18579	15	2.2	15	94	0	57	15	63	3	18	1.43
18858--18913	24	2.4	23	80	8	69	51	3	0	44	1.18
20874--21546	182	3.7	182	87	0	952	27	16	14	41	1.87
20874--21546	363	1.9	364	88	0	1017	27	16	14	41	1.87
24778--24880	33	3.1	32	83	8	109	35	0	2	61	1.11
24821--24877	18	3.3	18	73	14	66	45	0	0	54	0.99
24828--24882	15	3.5	15	74	13	56	41	0	0	58	0.98
25025--25078	17	3.2	17	72	0	54	31	0	3	64	1.11
26607--26654	21	2.3	21	85	0	60	25	39	12	22	1.89
26658--26730	21	3.5	21	88	7	112	17	34	27	20	1.95
27252--27348	33	2.9	34	82	3	124	54	4	3	38	1.35
27250--27355	34	3.2	33	80	8	124	53	4	2	38	1.36
27739--28623	128	6.9	128	99	0	1729	32	19	25	22	1.97
28691--28731	8	5.2	8	82	5	57	36	29	0	34	1.58
33322--33380	24	2.4	26	81	18	74	66	1	13	18	1.34
38723--38756	9	3.9	9	88	7	52	82	0	0	17	0.67
38722--38756	13	2.7	13	90	0	61	82	0	0	17	0.66
40249--40368	34	3.5	34	89	3	170	31	7	17	43	1.77
40354--40989	36	18.9	36	72	19	284	41	14	18	25	1.89
40354--40512	73	2.2	73	88	3	232	44	15	16	23	1.85
40493--40576	25	3.1	27	80	16	102	35	14	16	33	1.89
40393--40785	163	2.4	163	95	0	705	40	15	18	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40658--40739	25	3.0	27	80	16	98	35	13	17	34	1.88
40690--40739	25	2.0	25	100	0	100	28	16	20	36	1.93
40743--40827	42	2.0	42	95	0	152	48	12	18	20	1.81
40550--40989	205	2.2	203	90	5	687	40	14	19	25	1.89
45470--45499	10	3.0	10	100	0	60	60	10	10	20	1.57
56320--56991	54	12.5	54	84	4	759	28	16	20	34	1.94
56321--56991	108	6.2	108	86	2	857	28	16	20	34	1.94
56321--56991	162	4.1	162	88	1	900	28	16	20	34	1.94
62843--62891	20	2.5	20	96	0	89	28	22	18	30	1.97
68099--68138	20	2.0	20	95	0	71	35	7	25	32	1.84
69331--69414	32	2.6	32	80	0	87	39	14	14	32	1.86
71993--72274	71	4.0	70	75	4	219	36	23	18	21	1.95
72565--72594	5	6.0	5	100	0	60	80	0	0	20	0.72
73863--73908	23	2.0	22	83	4	56	54	19	15	10	1.70
84466--84531	27	2.4	27	84	0	87	40	15	3	40	1.62
84484--84545	27	2.3	27	85	0	79	38	14	4	41	1.67
84707--84774	35	1.9	35	84	0	91	55	8	7	27	1.57
89596--89629	6	5.7	6	92	0	50	11	0	5	82	0.83
93351--93401	26	2.0	26	88	0	75	25	23	25	25	2.00
95582--95685	45	2.3	45	86	0	145	42	28	6	22	1.79
95582--95710	45	2.9	44	79	6	143	41	24	7	26	1.81
97105--97190	43	2.0	43	97	0	163	45	20	6	26	1.77

Tables:   1

The End!