Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004031.1 Hibiscus syriacus cultivar Beakdansim tig00008807_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62151

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1417--1485
35
2.0
35
83
11
88
37
0
7
55
1.28
2748--2797
2
25.0
2
100
0
100
50
0
0
50
1.00
8020--8077
22
2.7
22
83
2
73
41
1
0
56
1.09
9563--9587
2
12.5
2
100
0
50
48
0
0
52
1.00
23505--23545
2
20.5
2
100
0
82
48
0
0
51
1.00
31744--31804
31
2.0
31
96
0
113
29
19
19
31
1.97
33326--33351
3
8.7
3
100
0
52
30
0
0
69
0.89
37910--38262
190
1.9
186
87
5
527
37
24
12
25
1.90
40675--40742
24
2.8
24
75
16
68
14
10
16
58
1.62
40936--40996
13
4.8
13
72
22
58
8
11
21
59
1.58
40926--41000
37
2.0
37
92
0
123
8
13
21
57
1.61
40949--41027
24
3.3
23
79
10
88
10
13
20
55
1.67
40912--41027
10
10.2
10
70
18
61
11
12
18
57
1.64
40964--41044
24
3.4
23
77
1
81
11
13
19
55
1.68
41625--41665
16
2.6
16
88
3
57
36
12
21
29
1.90
42818--42883
30
2.2
31
91
2
107
39
9
15
36
1.79
43528--43565
20
2.0
20
94
5
69
21
21
21
36
1.95
48149--48206
30
2.2
24
70
30
62
12
1
56
29
1.45
48225--48264
21
1.9
21
84
0
53
22
5
52
20
1.65
53707--53742
2
18.5
2
94
5
65
0
47
0
52
1.00
53742--53770
2
15.0
2
92
7
51
51
0
0
48
1.00
53745--53770
13
2.0
13
100
0
52
53
0
0
46
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61589--61637
15
2.9
16
82
14
55
40
2
0
57
1.10
61644--61672
2
14.5
2
100
0
58
48
0
0
51
1.00

Tables:   1

The End!