genome.fa.s4032.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004032.1 Hibiscus syriacus cultivar Beakdansim tig00008810_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  143968

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--400	208	1.9	207	92	1	676	32	15	19	32	1.93
468--529	18	3.5	17	78	6	70	30	11	14	43	1.80
2134--2184	21	2.4	21	83	0	66	29	5	5	58	1.45
2813--2881	34	2.1	33	86	7	97	23	26	15	34	1.95
3215--3288	20	3.7	20	81	3	94	29	24	28	17	1.97
3310--3407	21	4.7	21	79	13	112	21	20	34	23	1.96
3310--3377	13	4.9	14	73	18	54	22	20	32	25	1.98
3446--3515	30	2.3	30	97	0	131	34	10	10	45	1.71
4787--4963	88	2.0	88	97	0	336	29	11	7	50	1.66
6213--6346	20	6.7	20	88	1	187	32	21	26	19	1.97
6381--6423	22	1.9	23	90	4	70	20	20	32	25	1.97
7331--7389	2	29.5	2	100	0	118	49	0	0	50	1.00
9194--9389	56	3.5	55	86	3	241	40	15	16	27	1.88
13593--13635	23	1.9	22	85	4	59	58	4	6	30	1.45
20063--20089	13	2.1	13	100	0	54	25	14	29	29	1.95
22752--22796	19	2.4	19	85	7	56	31	28	26	13	1.94
23037--23095	11	5.2	12	80	10	61	38	3	0	57	1.15
23061--23093	17	1.9	17	93	0	57	39	3	0	57	1.14
24256--24306	24	2.2	23	82	10	59	54	5	1	37	1.36
27238--27297	31	1.9	31	93	0	102	40	6	8	45	1.61
27775--27835	32	1.9	32	83	3	79	57	1	0	40	1.08
27800--27880	23	3.2	24	76	13	83	55	1	0	43	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27802--27963	62	2.6	63	85	9	219	55	2	0	41	1.13
27832--27912	38	2.2	36	84	8	101	55	1	0	43	1.07
31990--32315	163	2.0	163	98	1	636	33	20	12	33	1.90
36054--36168	56	2.1	56	91	0	185	37	13	20	28	1.91
37426--37463	19	2.0	20	84	5	51	18	39	36	5	1.73
49085--49752	105	6.3	105	93	0	1104	33	25	19	22	1.97
51145--51183	20	2.0	20	89	0	60	17	41	35	5	1.72
53539--53598	29	2.1	29	84	6	77	21	23	16	38	1.93
54495--54547	19	2.7	20	79	5	72	37	13	11	37	1.80
54554--54679	40	3.1	40	70	14	114	38	13	20	26	1.90
54620--54865	127	1.9	127	86	5	347	39	10	19	30	1.85
58664--58818	29	5.4	29	87	1	186	19	21	18	41	1.91
58664--58823	57	2.8	58	84	0	196	20	20	18	40	1.91
65247--65818	186	3.1	183	95	2	1006	41	3	8	45	1.52
66505--66599	32	3.1	32	77	10	99	48	3	7	41	1.47
69100--69163	6	10.7	6	100	0	128	32	15	51	0	1.44
76554--76951	198	2.0	199	96	3	741	26	23	17	32	1.96
79067--79135	27	2.6	27	93	4	115	43	15	10	30	1.80
80162--80702	271	2.0	271	100	0	1082	34	12	18	33	1.89
86204--86269	22	2.8	23	73	20	64	48	3	0	48	1.17
86195--86257	24	2.5	25	79	10	74	50	3	0	46	1.17
86668--86707	2	20.0	2	100	0	80	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86897--86925	12	2.3	13	94	5	51	0	20	10	68	1.18
87959--87983	2	12.5	2	100	0	50	52	0	0	48	1.00
89683--89727	19	2.4	19	96	0	81	66	0	20	13	1.24
101380--101451	26	2.8	25	74	15	67	29	2	1	66	1.14
101387--101476	24	3.8	24	74	15	71	33	2	1	63	1.14
101440--101488	2	25.5	2	87	8	75	44	0	0	55	0.99
101518--101682	69	2.4	69	84	8	205	26	0	20	52	1.51
101517--101683	47	3.6	47	85	5	225	25	0	21	52	1.52
101649--101721	38	1.9	38	94	0	128	26	1	21	50	1.57
101517--101721	22	9.3	22	76	10	188	25	0	21	51	1.54
112386--112428	21	2.0	21	81	0	50	27	27	25	18	1.98
112453--112489	19	1.9	19	88	0	56	24	35	29	10	1.89
113336--113555	30	7.4	30	90	7	351	23	20	22	32	1.98
117672--117923	30	8.4	30	98	0	486	24	19	23	32	1.98
120581--120825	64	3.8	64	91	1	400	34	25	20	19	1.96
120582--120868	129	2.2	130	90	2	447	34	26	19	19	1.96
122551--122583	16	2.0	17	88	5	50	27	0	0	72	0.85
122587--122662	3	25.3	3	79	15	77	31	1	0	67	0.99
122566--122682	12	9.5	12	72	23	52	32	1	0	64	1.09
122660--122684	2	12.5	2	100	0	50	48	0	0	52	1.00
122710--122874	69	2.4	69	84	8	205	26	0	20	52	1.51
122709--122875	47	3.6	47	85	5	225	25	0	21	52	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122841--122913	38	1.9	38	94	0	128	26	1	21	50	1.57
122709--122913	22	9.3	22	76	10	188	25	0	21	51	1.54
135787--135831	22	2.0	22	100	0	90	51	8	13	26	1.70
140788--140812	12	2.1	12	100	0	50	76	0	16	8	1.02
142693--142791	47	2.1	48	84	1	128	31	6	7	55	1.51

Tables:   1

The End!