Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004033.1 Hibiscus syriacus cultivar Beakdansim tig00008812_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 71016
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Found at i:3721 original size:11 final size:10
Alignment explanation
Indices: 3690--3736 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
3680 TTCTTATTCA
*
3690 TTTTTTTT-A
1 TTTTTTTTGC
3699 TTTTTCTTTGC
1 TTTTT-TTTGC
3710 TATTTTTTTGC
1 T-TTTTTTTGC
*
3721 TTTTTTCTGC
1 TTTTTTTTGC
3731 TTTTTT
1 TTTTTT
3737 GTTTTTGTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
9 5 0.15
10 17 0.52
11 7 0.21
12 4 0.12
ACGTcount: A:0.04, C:0.11, G:0.06, T:0.79
Consensus pattern (10 bp):
TTTTTTTTGC
Found at i:3724 original size:21 final size:20
Alignment explanation
Indices: 3690--3736 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
3680 TTCTTATTCA
*
3690 TTTTTTTTA-TTTTTCTTTGC
1 TTTTTTTTACTTTTT-TCTGC
*
3710 TATTTTTTTGCTTTTTTCTGC
1 T-TTTTTTTACTTTTTTCTGC
3731 TTTTTT
1 TTTTTT
3737 GTTTTTGTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 6 0.26
21 12 0.52
22 5 0.22
ACGTcount: A:0.04, C:0.11, G:0.06, T:0.79
Consensus pattern (20 bp):
TTTTTTTTACTTTTTTCTGC
Found at i:12855 original size:4 final size:4
Alignment explanation
Indices: 11314--16408 Score: 5621
Period size: 4 Copynumber: 1273.8 Consensus size: 4
11304 TGTCTGTCTG
* * *
11314 TCTA TCTA TCTG TCTG TCTA TCTA TCTA TCTA TCTA TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * *
11362 TCTG TCTG TCTA TCTG TCTA TCTG TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* *
11410 TCTA TCTA TCTG TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* *
11458 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTG TCTG TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
11506 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
11554 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
11602 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
11650 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
11698 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* *
11746 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA CCTA TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * *
11794 TCTA TCTA TCTA TCTG TCTA TCTA TCTG TCTA TCTG TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * *
11842 TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTA TATG TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * *
11890 TCTG TCTA TCTG TCTA TCTA TCTG TCTA TCTA TCTG TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * *
11938 TCTA TCTG TCTA TCTA TCTG TCTA TCTG TCTA TCTA TCTG TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * *
11986 TCTG TCTA TCTG TCTA TCTA TCTA TCTG TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * *
12034 TCTA TCTA TCTA TCTG TCTA TCTA TCTG TCTA TCTA TCTA TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* *
12082 TCTA TCTA TCTG TCTA TCTA TCTG TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * *
12130 TCTG TCTA TCTA TCTG TCTA TCTA TCTG TCTA TCTA TCTG TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * *
12178 TCTG TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTG TCTA TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
12226 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
*
12274 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* *
12322 TCTA TCTA TCTA TCTA TCTA TCTA TCTG TCTA TCTA TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* *
12370 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTG TCTA TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * *
12418 TCTA TCTG TCTA TCTA TCTA TCTA TCTG TCTA TCTA TCTA TGTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
12466 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* *
12514 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTG TCTA TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
*
12562 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTG TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * *
12610 TCTG TCTA TCTA TCTG TCTA TCTA TCTA TCTG TCTA TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * *
12658 TCTA TCTA TCTA TCTA TCTA TCTA TCTG TCTA TCTG TCTA TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * *
12706 TCTA TCTA TCTA TCTG TCTA TCTA TCTA TCTA TCTG TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * *
12754 TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * *
12802 TCTG TCTA TCTA TCTA TCTG TCTA TCTG TCTA TCTG TCTA TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
12850 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
12898 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
12946 TCTA --TA TCTA TCTA TCTA TCTA TCTA TCTA TC-- TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
12990 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
13038 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
13086 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
13134 TCTA TCTA TCTA TC-- TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
13180 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
13228 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
13276 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
13324 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
13372 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
13420 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
13468 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
13516 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
13564 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
13612 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
13660 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
13708 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
13756 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * *
13804 TCTA TCTA TCTA TCTA TCTA TCTA CCTA CCTA TCTA TCTA CCTA CCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * *
13852 CCTA TCTA TCTA CCTA CCTA TCTA TCTA CCTA CCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * * * *
13900 CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * * * *
13948 CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA CCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
13996 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * *
14044 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTG TCTG TCTGTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TC--TA TCTA
* * * * * * * *
14094 TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * *
14142 TCTA TCTA TCTG TCTA TCTA TCTA TCTA TCTG TCTA TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * * *
14190 TCTG TCTA TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * * * *
14238 TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * *
14286 TCTG TCTG TCTA TCTG TCTT TCTG TCTG TCTG TCTA TCTA TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * *
14334 TCTG TCTG TCTA TCTA TCTA TCTG TCTG TCTG TCTG TCTG TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * * *
14382 TCTG TCTG TCTG TCTG TCTG TCTG TCTA TCTG TCTG TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * *
14430 TCTG TCTG TCTA TCTG TCTA TTCTG TCTA TCTG TCTG TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA -TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * * *
14479 TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTA TCTG TCTG TCTC TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * *
14527 TCTG TCTG TCTG TCTA TCTG TCTG TCTG TCTG TCTG TCTG TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * * *
14575 TCTG TCTG TCTG TCTG TCTA TCTG TCTG TCTG TCTG TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * *
14623 TCTG TCTG TCTG TCTC TCTA TCTT TCTG TCTG TCTA TCTG TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
14671 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
14719 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
14767 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
14815 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
14863 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* *
14911 TCTA TCTA TATA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
14959 TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * *
15007 TCTA TCTA TCTG TCTA TCTA TCTA TCTA TCTG TCTA TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * * *
15055 TCTG TCTG TCTA TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * * *
15103 TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTA TCTG TCTT TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
15151 TCTG TCTA TCTA TCTA TCTG TCTG TCTG TCTA TCTA TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * *
15199 TCTG TCTG TCTG TCTA TCTG TCTG TCTG TCTG TCTG TCTA TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * *
15247 TCTG TCTG TCTG TCTG TCTA TCTG TCTA TTCTG TCTA TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA -TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * * *
15296 TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTA TCTG TCTG TCTC
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * *
15344 TCTG TCTG TCTG TCTG TCTA TCTG TCTG TCTG TCTG TCTG TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * * *
15392 TCTG TCTG TCTG TCTG TCTA TCTG TCTG TCTG TCTG TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * *
15440 TCTG TCTG TCTC TCTA TCTT TCTG TCTG TCTA TCTA TCTA TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * *
15488 TCTG TCTA TCTA TCTA TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * *
15536 TCTG TCTG TCTG TCTG TCTG TCTA TCTG TCTG TCTG TCTG TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * *
15584 TCTG TCTG TCTG TCTG TCTG TCTA TCTG TCTG TCTG TCTG TCTA TCTT
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * *
15632 TCTG TCTG TCTA TCTA TCTA TCTG TCTG TCTG TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * *
15680 TCTG TCTG TCTG TCTG TCTG TCTG TCTA TCTG TCTA TCTG TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * * *
15728 TCTG TCTG TCTG TCTA TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
15776 TCTA TCTA TCTA TCTA TCTA TCTG TCTC TCTG TCTG TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * * * * *
15824 TCTG TATG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTGTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TC--TA TCTA
* * * * * * * * * * *
15874 TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * *
15922 TCTA TCTA TCTG TCTG TCTG TCTG TCTG TCTG TCCA TCTA TCCA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * *
15970 TCTA TCTA TCCA TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * *
16018 TCTG TCTG TCTG TCTC TCTA TCTT TCTG TCTG TCTA TCTA TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * *
16066 TCTG TCTG TCTA TCTA TCTA TCTG TCTG TCTG TCTG TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * *
16114 TCTG TCTG TCTA TCTG TCTG TCTG TCTG TCTG TCTG TCTA TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * * *
16162 TCTG TCTG TCTA TCTG TCTG TCTG TCTG TCTG TCTA TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * *
16210 TCTG TCTA TCTT TCTG TCTG TCTA TCTA TCTA TCTG TCTG TCTG TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * * *
16258 TCTA TCTA TCTC TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTA TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * * * * * *
16306 TCTA TCTG TCTA TCTA TCTG TCTG TCTG TCTA TCTG TCTG TCTG TCTG
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
* * * *
16354 TCTG TCTG TCTG TCTG TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
16402 TCTA TCT
1 TCTA TCT
16409 GTCTCTCTGT
Statistics
Matches: 4752, Mismatches: 327, Indels: 24
0.93 0.06 0.00
Matches are distributed among these distances:
2 6 0.00
4 4732 1.00
5 6 0.00
6 8 0.00
ACGTcount: A:0.16, C:0.26, G:0.09, T:0.49
Consensus pattern (4 bp):
TCTA
Found at i:16417 original size:8 final size:8
Alignment explanation
Indices: 16406--16483 Score: 138
Period size: 8 Copynumber: 9.8 Consensus size: 8
16396 TATCTATCTA
*
16406 TCTGTCTC
1 TCTGTCTG
16414 TCTGTCTG
1 TCTGTCTG
16422 TCTGTCTG
1 TCTGTCTG
16430 TCTGTCTG
1 TCTGTCTG
16438 TCTGTCTG
1 TCTGTCTG
*
16446 TATGTCTG
1 TCTGTCTG
16454 TCTGTCTG
1 TCTGTCTG
16462 TCTGTCTG
1 TCTGTCTG
16470 TCTGTCTG
1 TCTGTCTG
16478 TCTGTC
1 TCTGTC
16484 GCTCCTCCTC
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 67 1.00
ACGTcount: A:0.01, C:0.26, G:0.23, T:0.50
Consensus pattern (8 bp):
TCTGTCTG
Found at i:21715 original size:16 final size:16
Alignment explanation
Indices: 21681--21744 Score: 56
Period size: 16 Copynumber: 4.0 Consensus size: 16
21671 AAACCGACCA
* * *
21681 GAAAGTAACTCAAACT
1 GAAAGTAACCCGAATT
*
21697 GAAAGCAACCCGAATT
1 GAAAGTAACCCGAATT
* * *
21713 GAAAATAACCTGAATC
1 GAAAGTAACCCGAATT
*
21729 GAACGTAACCCGAATT
1 GAAAGTAACCCGAATT
21745 CAATTTATCC
Statistics
Matches: 36, Mismatches: 12, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.45, C:0.22, G:0.16, T:0.17
Consensus pattern (16 bp):
GAAAGTAACCCGAATT
Found at i:22009 original size:60 final size:60
Alignment explanation
Indices: 21924--22083 Score: 148
Period size: 60 Copynumber: 2.7 Consensus size: 60
21914 CCCTAATTTG
* * * * *
21924 AAATTGGTCC-CTACACTTTTAAACATTTCCATTTCATCCTTAAACTATGA-CTATTATTCT
1 AAATTGGTCCTC-AAACTTTTGAACATTTCCATTTCATCCTCAAACTATGATCT-TCATCCT
* * **
21984 AAATTTGTCCTCAAACTTTTGAACATTT-CATTTTCA-CCCCAAGTTATGATCTTCATCCT
1 AAATTGGTCCTCAAACTTTTGAACATTTCCA-TTTCATCCTCAAACTATGATCTTCATCCT
* * *
22043 AAATTGGTCCTCAAACTTTTTGAATATTTCAATTTTATCCT
1 AAATTGGTCCTCAAAC-TTTTGAACATTTCCATTTCATCCT
22084 AAATATTTGT
Statistics
Matches: 80, Mismatches: 14, Indels: 11
0.76 0.13 0.10
Matches are distributed among these distances:
59 31 0.39
60 45 0.56
61 4 0.05
ACGTcount: A:0.29, C:0.23, G:0.06, T:0.42
Consensus pattern (60 bp):
AAATTGGTCCTCAAACTTTTGAACATTTCCATTTCATCCTCAAACTATGATCTTCATCCT
Found at i:22479 original size:21 final size:22
Alignment explanation
Indices: 22436--22479 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
22426 TTTTACTTTG
*
22436 AACTACTAAAATAACTTTCCAA
1 AACTACTAAAATAACTTTACAA
* *
22458 AACTATTAAATTAA-TTTACAA
1 AACTACTAAAATAACTTTACAA
22479 A
1 A
22480 TTATTTTAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (22 bp):
AACTACTAAAATAACTTTACAA
Found at i:30525 original size:28 final size:25
Alignment explanation
Indices: 30473--30524 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
30463 AAAGATAATA
30473 ATGTCCATATAATAATATGATTATT
1 ATGTCCATATAATAATATGATTATT
30498 ATGTCCATATAATAATATGATTATT
1 ATGTCCATATAATAATATGATTATT
30523 AT
1 AT
30525 TGAAAGGTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (25 bp):
ATGTCCATATAATAATATGATTATT
Found at i:32678 original size:13 final size:13
Alignment explanation
Indices: 32660--32687 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
32650 TAAAGAGAGC
32660 AACAATTTTCTTT
1 AACAATTTTCTTT
32673 AACAATTTTCTTT
1 AACAATTTTCTTT
32686 AA
1 AA
32688 GATTGATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.14, G:0.00, T:0.50
Consensus pattern (13 bp):
AACAATTTTCTTT
Found at i:33017 original size:22 final size:21
Alignment explanation
Indices: 32992--33036 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
32982 GAATTAAGAA
*
32992 GATGTTTTTGGTCTTGATGGAT
1 GATGTTGTTGGTCTTGAT-GAT
*
33014 GATGTTGTTGGTGTTGATGAT
1 GATGTTGTTGGTCTTGATGAT
33035 GA
1 GA
33037 AACGAAGATG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.16, C:0.02, G:0.36, T:0.47
Consensus pattern (21 bp):
GATGTTGTTGGTCTTGATGAT
Found at i:33810 original size:11 final size:11
Alignment explanation
Indices: 33794--33823 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
33784 CAAAGGTGAA
33794 TGAGCTGGAGG
1 TGAGCTGGAGG
33805 TGAGCTGGAGG
1 TGAGCTGGAGG
33816 TGAGCTGG
1 TGAGCTGG
33824 CCATAGGTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.17, C:0.10, G:0.53, T:0.20
Consensus pattern (11 bp):
TGAGCTGGAGG
Found at i:34379 original size:2 final size:2
Alignment explanation
Indices: 34308--34365 Score: 107
Period size: 2 Copynumber: 29.0 Consensus size: 2
34298 TATAGATGTA
*
34308 AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
34350 AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
34366 GAAAATAAAT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:37458 original size:24 final size:23
Alignment explanation
Indices: 37427--37472 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
37417 ATGCTCTGAT
*
37427 TACAGC-TTGATGTAAGGTGAATC
1 TACAGCTTTGATGGAA-GTGAATC
37450 TACACGCTTTGATGGAAGTGAAT
1 TACA-GCTTTGATGGAAGTGAAT
37473 AGATAGCCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 4 0.20
24 8 0.40
25 8 0.40
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.30
Consensus pattern (23 bp):
TACAGCTTTGATGGAAGTGAATC
Found at i:38916 original size:2 final size:2
Alignment explanation
Indices: 38909--38933 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
38899 TCATAAGAAC
38909 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
38934 GAATAAGCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:40047 original size:98 final size:98
Alignment explanation
Indices: 39892--40134 Score: 310
Period size: 98 Copynumber: 2.5 Consensus size: 98
39882 GCATTGTTTT
* * ** *
39892 GCATTTAACTTGCATTAGTGGCACCTTTCTACTGAAAATGCTCAATTTTTCATCTAACTTACATT
1 GCATTTAACTTGCATTAGTGGCACCTTTCTACCGAAAATGCACCGTTTGTCATCTAACTTACATT
* *
39957 A-ATGACACCTTTCTACCAAAAATGCACCGTTAG
66 AGATG-CACATTTCTACCAAAAATGCACCGATAG
* * * *
39990 GCATTTAACTTTCATTTGCGGCACCTTTCTACCGAAAATGCACCGTTTGTCATCTAACTTGCATT
1 GCATTTAACTTGCATTAGTGGCACCTTTCTACCGAAAATGCACCGTTTGTCATCTAACTTACATT
* * *
40055 AGTTGCACATTTCTTCCAAAAATGCACTGATAG
66 AGATGCACATTTCTACCAAAAATGCACCGATAG
* *
40088 GCATTTAACTTGCATTAGTGGCACCTTTTTA-CGAAAAATACACCGTT
1 GCATTTAACTTGCATTAGTGGCACCTTTCTACCG-AAAATGCACCGTT
40135 AGGCATTTAT
Statistics
Matches: 124, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
97 2 0.02
98 120 0.97
99 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (98 bp):
GCATTTAACTTGCATTAGTGGCACCTTTCTACCGAAAATGCACCGTTTGTCATCTAACTTACATT
AGATGCACATTTCTACCAAAAATGCACCGATAG
Found at i:40125 original size:49 final size:49
Alignment explanation
Indices: 39892--40143 Score: 247
Period size: 49 Copynumber: 5.1 Consensus size: 49
39882 GCATTGTTTT
* ** **
39892 GCATTTAACTTGCATTAGTGGCACCTTTCTACTG-AAAATGCTCAATTTT
1 GCATTTAACTTGCATTAGTGGCACCTTTCTAC-GAAAAATGCACCGTTAG
* * * * * *
39941 TCATCTAACTTACATTAATGACACCTTTCTACCAAAAATGCACCGTTAG
1 GCATTTAACTTGCATTAGTGGCACCTTTCTACGAAAAATGCACCGTTAG
* * * *
39990 GCATTTAACTTTCATTTGCGGCACCTTTCTACCG-AAAATGCACCGTTTG
1 GCATTTAACTTGCATTAGTGGCACCTTTCTA-CGAAAAATGCACCGTTAG
* * * * * * * *
40039 TCATCTAACTTGCATTAGTTGCACATTTCTTCCAAAAATGCACTGATAG
1 GCATTTAACTTGCATTAGTGGCACCTTTCTACGAAAAATGCACCGTTAG
* *
40088 GCATTTAACTTGCATTAGTGGCACCTTTTTACGAAAAATACACCGTTAG
1 GCATTTAACTTGCATTAGTGGCACCTTTCTACGAAAAATGCACCGTTAG
40137 GCATTTA
1 GCATTTA
40144 TTTTCATTTT
Statistics
Matches: 158, Mismatches: 42, Indels: 6
0.77 0.20 0.03
Matches are distributed among these distances:
48 1 0.01
49 156 0.99
50 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (49 bp):
GCATTTAACTTGCATTAGTGGCACCTTTCTACGAAAAATGCACCGTTAG
Found at i:44457 original size:85 final size:85
Alignment explanation
Indices: 44314--44479 Score: 296
Period size: 85 Copynumber: 2.0 Consensus size: 85
44304 ATACAATCAC
* *
44314 GACACACGAATGTGTGTCATTTTCATTTATGACGGGGGCTTCAATGACACGCAATGTAAGTCATA
1 GACACACAAATGTGTGTCATCTTCATTTATGACGGGGGCTTCAATGACACGCAATGTAAGTCATA
*
44379 AATGCGTGTCATAAATTTAT
66 AATGCGCGTCATAAATTTAT
*
44399 GACACACAAATGTGTGTCATCTTCATTTATGACGGGGGCTTCAATGACGCGCAATGTAAGTCATA
1 GACACACAAATGTGTGTCATCTTCATTTATGACGGGGGCTTCAATGACACGCAATGTAAGTCATA
44464 AATGCGCGTCATAAAT
66 AATGCGCGTCATAAAT
44480 GTGCGTCATA
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 77 1.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30
Consensus pattern (85 bp):
GACACACAAATGTGTGTCATCTTCATTTATGACGGGGGCTTCAATGACACGCAATGTAAGTCATA
AATGCGCGTCATAAATTTAT
Found at i:44474 original size:13 final size:13
Alignment explanation
Indices: 44458--44505 Score: 87
Period size: 13 Copynumber: 3.7 Consensus size: 13
44448 CGCAATGTAA
44458 GTCATAAATGCGC
1 GTCATAAATGCGC
*
44471 GTCATAAATGTGC
1 GTCATAAATGCGC
44484 GTCATAAATGCGC
1 GTCATAAATGCGC
44497 GTCATAAAT
1 GTCATAAAT
44506 TTATGACGCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 33 1.00
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (13 bp):
GTCATAAATGCGC
Found at i:44480 original size:26 final size:26
Alignment explanation
Indices: 44451--44505 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
44441 AATGACGCGC
44451 AATGTAAGTCATAAATGCGCGTCATA
1 AATGTAAGTCATAAATGCGCGTCATA
**
44477 AATGTGCGTCATAAATGCGCGTCATA
1 AATGTAAGTCATAAATGCGCGTCATA
44503 AAT
1 AAT
44506 TTATGACGCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.27
Consensus pattern (26 bp):
AATGTAAGTCATAAATGCGCGTCATA
Found at i:45090 original size:67 final size:67
Alignment explanation
Indices: 44959--45090 Score: 156
Period size: 67 Copynumber: 2.0 Consensus size: 67
44949 GTTGCAGGTT
* ** *
44959 TGATTCAACACTACAGTGTGTAAGGACACTTAGTGCAGGTGGTAGGTATTACCTTAAGTATCATA
1 TGATTCAACACTACAGTGTGTAAGGACACTTAGTGCAGGTGGTAGGCACGACATTAAGTATCATA
45024 TC
66 TC
** * * * * * *
45026 TGATTCAGTACTATAGTGTGTAAGGACACTTATTTCAGGTGGTGGGCACGACATTATGTGTCATA
1 TGATTCAACACTACAGTGTGTAAGGACACTTAGTGCAGGTGGTAGGCACGACATTAAGTATCATA
45091 GCACTATGGT
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
67 53 1.00
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (67 bp):
TGATTCAACACTACAGTGTGTAAGGACACTTAGTGCAGGTGGTAGGCACGACATTAAGTATCATA
TC
Found at i:47180 original size:20 final size:20
Alignment explanation
Indices: 47155--47194 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
47145 CCATATTGCC
47155 ATTCCTCAATCCAAAACCCA
1 ATTCCTCAATCCAAAACCCA
47175 ATTCCTCAATCCAAAACCCA
1 ATTCCTCAATCCAAAACCCA
47195 GTGCCTCACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.20
Consensus pattern (20 bp):
ATTCCTCAATCCAAAACCCA
Found at i:47201 original size:20 final size:20
Alignment explanation
Indices: 47158--47202 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
47148 TATTGCCATT
*
47158 CCTCAATCCAAAACCCAATT
1 CCTCAATCCAAAACCCAATG
*
47178 CCTCAATCCAAAACCCAGTG
1 CCTCAATCCAAAACCCAATG
47198 CCTCA
1 CCTCA
47203 CCTCGATGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.36, C:0.42, G:0.04, T:0.18
Consensus pattern (20 bp):
CCTCAATCCAAAACCCAATG
Found at i:68179 original size:20 final size:20
Alignment explanation
Indices: 68156--68194 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
68146 AATTAAAACA
68156 TGTTTAAAG-TGTTTAAAATG
1 TGTTTAAAGCT-TTTAAAATG
*
68176 TGTTTCAAGCTTTTAAAAT
1 TGTTTAAAGCTTTTAAAAT
68195 ATGAAAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.33, C:0.05, G:0.15, T:0.46
Consensus pattern (20 bp):
TGTTTAAAGCTTTTAAAATG
Found at i:68433 original size:20 final size:20
Alignment explanation
Indices: 68404--68463 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
68394 TGTGTTTAGA
68404 AGTTTTGAAATATTCACAAT
1 AGTTTTGAAATATTCACAAT
* *
68424 AGTTTCGAAACT-TTCCTCAAT
1 AGTTTTGAAA-TATT-CACAAT
*
68445 -GTTTTGAAACATTCACAAT
1 AGTTTTGAAATATTCACAAT
68464 GCTTTCGGAA
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
19 5 0.16
20 21 0.66
21 6 0.19
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (20 bp):
AGTTTTGAAATATTCACAAT
Found at i:69309 original size:20 final size:19
Alignment explanation
Indices: 69285--69354 Score: 88
Period size: 20 Copynumber: 3.5 Consensus size: 19
69275 GTGTTTAGAA
69285 GTTTCGAAACATTCACAAT
1 GTTTCGAAACATTCACAAT
*
69304 AGTTTCGAAAC-TTGCCCCAAT
1 -GTTTCGAAACATT--CACAAT
69325 GTTTCGAAACATTCACAAT
1 GTTTCGAAACATTCACAAT
69344 GCTTTCGAAAC
1 G-TTTCGAAAC
69355 GGCTATAACA
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
19 8 0.18
20 29 0.66
21 7 0.16
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.30
Consensus pattern (19 bp):
GTTTCGAAACATTCACAAT
Found at i:69422 original size:880 final size:883
Alignment explanation
Indices: 67717--70307 Score: 4444
Period size: 880 Copynumber: 2.9 Consensus size: 883
67707 AATATTTCAA
*
67717 AAAGCTTTATGCATGTGAACTTTAATGTTTCATGTTAACATTGCATAAAGTAAAATACACTTAGA
1 AAAGCTTTATGCATGTGAACTTTAATGTTTCATGTTAATATTGCATAAAGTAAAATACACTTAGA
*
67782 TTTATTTAATTTCATGTGTTACTGACATGTTTGTCCATCTTTGTTGAAATTCAATAGTTTTTGGA
66 TTTATTGAATTTCATGTGTTACTGACATGTTTGTCCATCTTTGTTGAAATTCAATAGTTTTTGGA
*
67847 CTTTCATGATTTTAAAGTTAATTTTTTAATGCATTTGTTGAGGGGGAGATTTT-AAAAAATCAAA
131 CTTTCATGTTTTTAAAGTTAATTTTTTAATGCATTTGTTGAGGGGGAGATTTTAAAAAAATCAAA
* *
67911 TATTTTATGTTAAAATTTATTACTTACTCTCTATTGTTATTTTTGAACCTAAATGTTTGAAATAT
196 TATTTTATGTTAAAATTTTTTACTTACTCTATATTGTTATTTTTGAACCTAAATGTTTGAAATAT
*
67976 TTTTTATATAACAAAAAGGGAAGATTGTTAAACTTATATTTTGATATAATAAATATTAGTAAAAT
261 TTTTGATATAACAAAAAGGGAAGATTGTTAAACTTATATTTTGATATAAT-AATATTAGTAAAAT
68041 TGATTTTGGACTTATTCAAATACTTCAAAAATAATTCAAAGTCCAAAATATCTTGAAAAATATTG
325 TGATTTTGGACTTATTCAAATACTTCAAAAATAATTCAAAGTCCAAAATATCTTGAAAAATATTG
*
68106 TTTTCTAAATTTTTTTATATATGTGAAATGTTTTTTAGTTAATTAAAACATGTTTAAAGTGTTTA
390 TTTTCTAAATTTTTTT-TATATGTGAAATGTTTTTGAGTTAATTAAAACATGTTT-AAGTGTTTA
* *
68171 AAATGTGTTTCAAGCTTTTAAAATATGAAAAACACTATTTAATCACTATTTGCACTGTTCATGAT
453 AAATGTGTTTCAAGCTTTTAAAATATGAAAAACACTATTCAATCACTATTTGCACTGTTCATGAC
* * *
68236 AGTATTCATACATGAGTACTATTCATAGTTTGGAAAATTTTGTAAGTTTCGAAGCTTTGCACCCT
518 ACTATTCATACATGAGTACTATTCATAGTTTGGAAACTTTTGTAAGTTTCGAAACTTTGCACCCT
* * *
68301 GAAACTGTTTTAATGGGTCAATTTTCTTCAACGGTCATATTTTTAAGTAAGAGTTTCGAAACTTT
583 GAAACTGTTTTAATGGGTCGATTTTCTTCAACGATCATATTTTTAAGTAAGAGTTTCAAAACTTT
* * *
68366 CATCAAAGTTCGAAACTTTCAAAAACAGTGTGTTTAGAAGTTTTGAAATATTCACAATAGTTTCG
648 CATCAAAGTTCAAAACTTTCAAAAACAGTGTGTTTAGAAGTTTCGAAACATTCACAATAGTTTCG
* * * * *
68431 AAACTTTCCTCAATGTTTTGAAACATTCACAATGCTTTCGGAATGGCTATAACACATCCCCAACG
713 AAACTTGCCCCAATGTTTCGAAACATTCACAATGCTTTCGAAACGGCTATAACACATCCCCAACG
*
68496 GTCATAAATGGCTAGAAACTTATTCCACACAATAAAACACTTCAAGGAAACTTGAAGAAGG-TAC
778 GTCATAAATGGCTAGCAACTTATTCCACACAATAAAACACTTCAAGGAAACTTGAAGAAGGTTA-
* *
68560 CAACACCTATGCAAGCAATATAGATCAAGCGAAAAACTTTAC
842 CAACACCTATCCAAGCAATATAGATCAAGAGAAAAACTTTAC
68602 AAAGCTTTATGCATGTGAACTTTAATGTTTCATGTTAATATTGCATAAAGTAAAATACACTTAGA
1 AAAGCTTTATGCATGTGAACTTTAATGTTTCATGTTAATATTGCATAAAGTAAAATACACTTAGA
*
68667 TTTATTGAATTTCATGTGTTACTGACATGTTTGTCCATCTTTGTTGAAATTCAGTAGTTTTTGGA
66 TTTATTGAATTTCATGTGTTACTGACATGTTTGTCCATCTTTGTTGAAATTCAATAGTTTTTGGA
68732 CTTTCATGTTTTTAAAGTTAATTTTTTTAATGCATTTGTTGAGGGGGAGATTTTTAAAAAAATCA
131 CTTTCATGTTTTTAAAGTTAA-TTTTTTAATGCATTTGTTGAGGGGGAGA-TTTTAAAAAAATCA
68797 AATATTTTATGTTAAAATTTTTTACTTACTCTATATTGTTATTTTTGAACCTAAATGTTTGAAAT
194 AATATTTTATGTTAAAATTTTTTACTTACTCTATATTGTTATTTTTGAACCTAAATGTTTGAAAT
*
68862 ATTTTTGATATAACAAAAAGGGGAGATTGTTAAACTTATATTTTGATATAAT-A-A-T-GTAAAA
259 ATTTTTGATATAACAAAAAGGGAAGATTGTTAAACTTATATTTTGATATAATAATATTAGTAAAA
68923 TTGATTTTGGACTTATTCAAATACTTCAAAAATAATTCAAAGTCCAAAATATCTTG-AAAATATT
324 TTGATTTTGGACTTATTCAAATACTTCAAAAATAATTCAAAGTCCAAAATATCTTGAAAAATATT
68987 GTTTTCT-AATTTTTTTTATATGTGAAATGTTTTTGAGTTAATTAAAACATGTTTGAAGTGTTTA
389 GTTTTCTAAATTTTTTTTATATGTGAAATGTTTTTGAGTTAATTAAAACATGTTT-AAGTGTTTA
*
69051 AAATGTGTTTCAAGCTTTTAAAATATGAAAAATACTATTCAATCACTATTTGCACTGTTCATGAC
453 AAATGTGTTTCAAGCTTTTAAAATATGAAAAACACTATTCAATCACTATTTGCACTGTTCATGAC
*
69116 ATTATTCATACATGAGTACTATTCATAGTTTGGAAACTTTTGTAAGTTTCGAAACTTTGCACCCT
518 ACTATTCATACATGAGTACTATTCATAGTTTGGAAACTTTTGTAAGTTTCGAAACTTTGCACCCT
* *
69181 GAAACTATTTTAATGGGTCGATTTTCTTCAACGATCATATTTTTAAGTAAGAGTTTTAAAACTTT
583 GAAACTGTTTTAATGGGTCGATTTTCTTCAACGATCATATTTTTAAGTAAGAGTTTCAAAACTTT
* **
69246 CATCAAAGTTCAAAACTTTTAAAAATTGTGTGTTTAGAAGTTTCGAAACATTCACAATAGTTTCG
648 CATCAAAGTTCAAAACTTTCAAAAACAGTGTGTTTAGAAGTTTCGAAACATTCACAATAGTTTCG
*
69311 AAACTTGCCCCAATGTTTCGAAACATTCACAATGCTTTCGAAACGGCTATAACACATCCCAAACG
713 AAACTTGCCCCAATGTTTCGAAACATTCACAATGCTTTCGAAACGGCTATAACACATCCCCAACG
* *
69376 GCCGTAAATGGCTAGCAACTTATTCCACACAATAAAACACTTCAAGGAAACTTGAAGAAGGTTAC
778 GTCATAAATGGCTAGCAACTTATTCCACACAATAAAACACTTCAAGGAAACTTGAAGAAGGTTAC
* *
69441 AACACCTATCCAAGTAATATAGATCAAGAGAAAAACTTTAG
843 AACACCTATCCAAGCAATATAGATCAAGAGAAAAACTTTAC
* *
69482 AAAGCTTTATGAATGTGAACTTTAATGTTTCATGTTAATATTGCATAAAGTAAAATACATTTAGA
1 AAAGCTTTATGCATGTGAACTTTAATGTTTCATGTTAATATTGCATAAAGTAAAATACACTTAGA
* * *
69547 TTTATTGAATTTCATTTGTTACTGACATGCTTGTCCATATTTGTTGAAATTCAATAGTTTTTGGA
66 TTTATTGAATTTCATGTGTTACTGACATGTTTGTCCATCTTTGTTGAAATTCAATAGTTTTTGGA
* *
69612 CTTTCATGTTTTTAAAGTTAATTTTTTAATGCATTTGTTGAGGGGGAGATTTAAAAAAAATTTAA
131 CTTTCATGTTTTTAAAGTTAATTTTTTAATGCATTTGTTGAGGGGGAGATTTTAAAAAAA-TCAA
* *
69677 ATATTTTATGTTTAAA-TTTTTACTTACTCTATATTTTTATTTTTTGAACCTAAATGTTTGAAAT
195 ATATTTTATGTTAAAATTTTTTACTTACTCTATATTGTTA-TTTTTGAACCTAAATGTTTGAAAT
*
69741 ATTTTTGATATAACAAAAAGGGTAGATTGTTAAACTTATATTTTGATATAATAAATATTAGTAAA
259 ATTTTTGATATAACAAAAAGGGAAGATTGTTAAACTTATATTTTGATATAAT-AATATTAGTAAA
69806 ATTGATTTTGGACTTATTCAAATACTTCAAAAATAATTCAAAGTCCAAAATATCTTGAAAAATAT
323 ATTGATTTTGGACTTATTCAAATACTTCAAAAATAATTCAAAGTCCAAAATATCTTGAAAAATAT
* * *
69871 TGTTTTCTAAATTTTTTATATATGTGAAATATTTTTGAGTTAATTAAAATATGTTTAATGTGTTT
388 TGTTTTCTAAATTTTTTTTATATGTGAAATGTTTTTGAGTTAATTAAAACATGTTTAA-GTGTTT
* *
69936 AAAATATGTTTCAAGATTTTAAAATATGAAAAACACTATTCAATCACTATTTGCACTGTTCATGA
452 AAAATGTGTTTCAAGCTTTTAAAATATGAAAAACACTATTCAATCACTATTTGCACTGTTCATGA
*
70001 CACTATTAATACATGAGTACTATTCATAGTTTGGAAACTTTTGTAAGTTTCGAAACTTTGCACCC
517 CACTATTCATACATGAGTACTATTCATAGTTTGGAAACTTTTGTAAGTTTCGAAACTTTGCACCC
*
70066 TGAAACTGTTTTAATGGGTCGATTTTCTTCAATGATCATATTTTTAAGTAAGAGTTTCAAAACTT
582 TGAAACTGTTTTAATGGGTCGATTTTCTTCAACGATCATATTTTTAAGTAAGAGTTTCAAAACTT
* *
70131 TCGTCAAAGTTCAAAACTTTCAAAACCAGTGTGTTTAGAAGTTTCGAAACATTCACAATAGTTTC
647 TCATCAAAGTTCAAAACTTTCAAAAACAGTGTGTTTAGAAGTTTCGAAACATTCACAATAGTTTC
* * *
70196 GAAACTTGCCCCAATGTTTCGAAACATTCACAATGATTTTGAAACGGCTATAACTCATCCCCAAC
712 GAAACTTGCCCCAATGTTTCGAAACATTCACAATGCTTTCGAAACGGCTATAACACATCCCCAAC
* *
70261 GGTCATAAATGGCTAGCAACTTATTCCACATAATAAAACACTCCAAG
777 GGTCATAAATGGCTAGCAACTTATTCCACACAATAAAACACTTCAAG
70308 CAATATAGAT
Statistics
Matches: 1617, Mismatches: 75, Indels: 27
0.94 0.04 0.02
Matches are distributed among these distances:
878 32 0.02
879 121 0.07
880 589 0.36
881 12 0.01
882 16 0.01
883 63 0.04
884 63 0.04
885 165 0.10
886 430 0.27
887 4 0.00
888 122 0.08
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (883 bp):
AAAGCTTTATGCATGTGAACTTTAATGTTTCATGTTAATATTGCATAAAGTAAAATACACTTAGA
TTTATTGAATTTCATGTGTTACTGACATGTTTGTCCATCTTTGTTGAAATTCAATAGTTTTTGGA
CTTTCATGTTTTTAAAGTTAATTTTTTAATGCATTTGTTGAGGGGGAGATTTTAAAAAAATCAAA
TATTTTATGTTAAAATTTTTTACTTACTCTATATTGTTATTTTTGAACCTAAATGTTTGAAATAT
TTTTGATATAACAAAAAGGGAAGATTGTTAAACTTATATTTTGATATAATAATATTAGTAAAATT
GATTTTGGACTTATTCAAATACTTCAAAAATAATTCAAAGTCCAAAATATCTTGAAAAATATTGT
TTTCTAAATTTTTTTTATATGTGAAATGTTTTTGAGTTAATTAAAACATGTTTAAGTGTTTAAAA
TGTGTTTCAAGCTTTTAAAATATGAAAAACACTATTCAATCACTATTTGCACTGTTCATGACACT
ATTCATACATGAGTACTATTCATAGTTTGGAAACTTTTGTAAGTTTCGAAACTTTGCACCCTGAA
ACTGTTTTAATGGGTCGATTTTCTTCAACGATCATATTTTTAAGTAAGAGTTTCAAAACTTTCAT
CAAAGTTCAAAACTTTCAAAAACAGTGTGTTTAGAAGTTTCGAAACATTCACAATAGTTTCGAAA
CTTGCCCCAATGTTTCGAAACATTCACAATGCTTTCGAAACGGCTATAACACATCCCCAACGGTC
ATAAATGGCTAGCAACTTATTCCACACAATAAAACACTTCAAGGAAACTTGAAGAAGGTTACAAC
ACCTATCCAAGCAATATAGATCAAGAGAAAAACTTTAC
Found at i:69937 original size:20 final size:20
Alignment explanation
Indices: 69914--69963 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
69904 TTTGAGTTAA
69914 TTAAAATATGTTT-AATG-TGT
1 TTAAAATATGTTTCAA-GAT-T
69934 TTAAAATATGTTTCAAGATT
1 TTAAAATATGTTTCAAGATT
69954 TTAAAATATG
1 TTAAAATATG
69964 AAAAACACTA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 25 0.89
21 3 0.11
ACGTcount: A:0.40, C:0.02, G:0.12, T:0.46
Consensus pattern (20 bp):
TTAAAATATGTTTCAAGATT
Found at i:70195 original size:20 final size:20
Alignment explanation
Indices: 70170--70229 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
70160 TGTGTTTAGA
70170 AGTTTCGAAACATTCACAAT
1 AGTTTCGAAACATTCACAAT
*
70190 AGTTTCGAAAC-TTGCCCCAAT
1 AGTTTCGAAACATT--CACAAT
70211 -GTTTCGAAACATTCACAAT
1 AGTTTCGAAACATTCACAAT
70230 GATTTTGAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
19 7 0.20
20 21 0.60
21 7 0.20
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.30
Consensus pattern (20 bp):
AGTTTCGAAACATTCACAAT
Found at i:70239 original size:20 final size:20
Alignment explanation
Indices: 70172--70240 Score: 72
Period size: 20 Copynumber: 3.5 Consensus size: 20
70162 TGTTTAGAAG
70172 TTTCGAAACATTCACAAT-A
1 TTTCGAAACATTCACAATGA
*
70191 GTTTCGAAAC-TTGCCCCAATG-
1 -TTTCGAAACATT--CACAATGA
70212 TTTCGAAACATTCACAATGA
1 TTTCGAAACATTCACAATGA
*
70232 TTTTGAAAC
1 TTTCGAAAC
70241 GGCTATAACT
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
19 8 0.20
20 26 0.63
21 7 0.17
ACGTcount: A:0.35, C:0.22, G:0.12, T:0.32
Consensus pattern (20 bp):
TTTCGAAACATTCACAATGA
Done.