Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004034.1 Hibiscus syriacus cultivar Beakdansim tig00008813_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87627

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5060--5116
27
2.1
27
86
0
78
10
40
5
43
1.62
6473--6508
15
2.6
13
87
12
54
16
2
0
80
0.83
8626--8662
19
1.9
19
100
0
74
37
5
29
27
1.79
8893--8926
12
2.8
12
90
0
50
0
11
55
32
1.36
9042--9159
21
5.6
21
80
7
123
21
16
23
38
1.92
9039--9180
41
3.4
41
80
7
169
23
15
23
37
1.93
9147--9441
142
2.1
142
92
0
482
29
17
23
30
1.97
9973--10061
29
3.1
29
80
0
97
26
22
13
37
1.91
12570--12617
20
2.5
19
83
10
53
31
14
4
50
1.62
13091--13134
20
2.2
20
95
0
79
13
9
45
31
1.75
17397--17597
20
10.0
21
72
10
105
30
26
11
31
1.92
17397--17498
41
2.5
40
79
4
105
31
29
12
26
1.93
17399--17549
81
1.9
80
83
4
196
30
27
11
29
1.92
17441--17590
60
2.5
60
77
5
151
28
25
12
34
1.91
17441--17598
40
3.9
40
75
5
140
28
24
12
34
1.91
17418--17629
20
10.6
20
69
15
77
29
24
11
34
1.90
17767--17804
16
2.5
15
84
12
51
31
2
0
65
1.06
24592--24647
23
2.4
23
81
0
67
32
23
25
19
1.98
24674--24715
22
1.9
22
85
0
57
40
14
9
35
1.78
24988--25017
15
2.1
14
93
6
51
26
13
23
36
1.92
29026--29124
3
33.0
3
93
0
171
65
2
0
32
1.04
29152--29208
3
19.0
3
96
0
105
33
0
1
64
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31317--31368
20
2.6
21
76
11
56
26
7
0
65
1.20
33458--33500
22
2.0
22
86
9
61
16
16
4
62
1.48
37575--37803
114
2.0
114
89
0
350
34
15
20
30
1.93
40389--40443
22
2.5
22
81
0
65
34
10
14
40
1.81
41124--42891
76
23.6
76
95
4
3131
22
19
21
35
1.96
41124--42891
451
3.9
452
96
2
3243
22
19
21
35
1.96
42833--42927
47
2.0
47
89
0
145
27
21
20
31
1.97
43055--43132
3
26.0
3
97
0
147
33
0
1
65
1.01
46144--46192
21
2.3
21
100
0
98
18
18
30
32
1.95
46861--47045
88
2.1
88
98
0
361
27
10
12
49
1.74
49557--49626
19
3.9
19
69
14
58
55
2
1
40
1.23
49582--49642
15
3.8
15
72
16
59
52
3
3
40
1.34
49550--49641
34
2.7
34
93
1
150
54
3
2
40
1.29
57685--57811
46
2.8
46
90
0
182
30
26
7
35
1.83
62511--62626
46
2.5
46
91
1
180
30
31
5
32
1.80
63475--63499
3
8.3
3
100
0
50
64
0
0
36
0.94
69111--69149
15
2.6
15
95
0
69
17
30
10
41
1.83
73512--73588
32
2.4
32
82
4
84
27
28
25
18
1.98
80255--80722
164
2.9
162
92
3
763
36
11
9
41
1.75
83050--83349
84
3.6
83
82
4
338
35
20
21
23
1.96

Tables:   1

The End!