genome.fa.s4035.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004035.1 Hibiscus syriacus cultivar Beakdansim tig00008814_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97839

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3597--3731	70	1.9	72	86	6	195	58	9	14	17	1.62
11554--11583	10	3.0	10	95	0	51	53	0	0	46	1.00
11563--11610	16	2.9	16	87	3	69	54	0	0	45	0.99
11761--11818	27	2.1	27	83	0	71	31	1	3	63	1.21
12114--12195	38	2.2	38	90	0	128	29	7	12	51	1.66
19864--20029	54	3.1	53	81	5	174	37	15	18	28	1.91
20691--20745	3	19.0	3	92	7	96	67	0	0	32	0.91
23260--23309	24	2.1	24	88	7	75	14	6	10	70	1.33
23753--24135	131	2.9	131	86	1	491	32	10	17	40	1.83
27823--27860	20	1.9	20	100	0	76	36	10	28	23	1.88
29470--29536	26	2.6	26	95	0	125	23	29	20	25	1.99
30356--30409	23	2.3	24	87	3	83	9	29	3	57	1.47
45402--45518	59	2.0	59	84	0	153	35	15	5	44	1.69
56268--56342	35	2.1	35	90	0	114	45	20	0	34	1.51
56338--56414	35	2.2	35	84	6	102	40	0	18	41	1.50
56528--56573	21	2.2	21	88	0	65	34	30	19	15	1.93
59260--59290	14	2.2	14	94	0	53	32	0	6	61	1.21
64766--64809	20	2.2	20	84	4	63	65	0	15	18	1.27
73764--73838	32	2.3	33	90	2	116	16	2	24	57	1.52
74816--75344	83	6.4	83	80	2	551	30	18	17	33	1.94
75418--75479	8	7.9	8	81	15	67	38	29	1	30	1.67
83174--83354	95	1.9	95	89	2	283	32	16	23	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83782--83908	20	5.7	20	72	23	101	38	13	28	19	1.90
83799--83935	27	5.6	26	71	22	118	40	12	26	20	1.88
83772--84123	47	7.5	47	90	3	541	41	11	25	21	1.86
83772--84113	138	2.4	139	89	4	515	41	11	24	21	1.87
84018--84095	20	3.5	20	69	24	66	41	11	28	19	1.86
85512--85540	14	2.1	14	100	0	58	44	6	13	34	1.71
89058--89211	82	1.9	82	98	0	299	31	11	11	46	1.74
90303--90367	23	2.8	23	79	9	87	35	24	21	18	1.96
90298--90397	46	2.2	46	82	10	116	37	23	20	20	1.95
92146--92278	71	1.9	70	83	7	171	22	19	27	30	1.98
95586--95648	3	20.7	3	96	3	117	66	0	0	33	0.92

Tables:   1

The End!