Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004036.1 Hibiscus syriacus cultivar Beakdansim tig00008817_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58611
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33
Found at i:3700 original size:16 final size:16
Alignment explanation
Indices: 3667--3715 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
3657 TAAGGTAATG
3667 GAATAAGAATAGATGAAA
1 GAATAAGAA-A-ATGAAA
3685 GAATAAGAAAATGAAA
1 GAATAAGAAAATGAAA
* * *
3701 TAGTAAGAAAGTGAA
1 GAATAAGAAAATGAA
3716 GATAACTTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 18 0.64
17 1 0.04
18 9 0.32
ACGTcount: A:0.61, C:0.00, G:0.22, T:0.16
Consensus pattern (16 bp):
GAATAAGAAAATGAAA
Found at i:7798 original size:16 final size:16
Alignment explanation
Indices: 7765--7813 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
7755 TAAGGTAATG
7765 GAATAAGAATAGATGAAA
1 GAATAAGAA-A-ATGAAA
7783 GAATAAGAAAATGAAA
1 GAATAAGAAAATGAAA
* * *
7799 TAGTAAGAAAGTGAA
1 GAATAAGAAAATGAA
7814 GATAACTTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 18 0.64
17 1 0.04
18 9 0.32
ACGTcount: A:0.61, C:0.00, G:0.22, T:0.16
Consensus pattern (16 bp):
GAATAAGAAAATGAAA
Found at i:8862 original size:21 final size:19
Alignment explanation
Indices: 8833--8871 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
8823 AACCCCTTTG
8833 AAAACACATGATATTTTAATA
1 AAAACACAT-A-ATTTTAATA
*
8854 AAAATACATAATTTTAAT
1 AAAACACATAATTTTAAT
8872 GAAGATAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 1 0.06
21 8 0.47
ACGTcount: A:0.54, C:0.08, G:0.03, T:0.36
Consensus pattern (19 bp):
AAAACACATAATTTTAATA
Found at i:12167 original size:59 final size:59
Alignment explanation
Indices: 12075--12211 Score: 204
Period size: 59 Copynumber: 2.3 Consensus size: 59
12065 ATATACACCG
* * *
12075 TAGTGCTAA-CCCGAGTATGAAACATAAGGTCGTGTCCACCATCTACACTAGTTATACTT
1 TAGTG-TAATCCCGAATATGAAACATAAGGTCGTGCCCACCATATACACTAGTTATACTT
* * *
12134 TAGTGTAGTCCCGAATATGACACATAAGGTCGTGCCCACCATATGCACTAGTTATACTT
1 TAGTGTAATCCCGAATATGAAACATAAGGTCGTGCCCACCATATACACTAGTTATACTT
12193 TAGTGTAATCCCGAATATG
1 TAGTGTAATCCCGAATATG
12212 CAGCCTACTG
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
58 2 0.03
59 68 0.97
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (59 bp):
TAGTGTAATCCCGAATATGAAACATAAGGTCGTGCCCACCATATACACTAGTTATACTT
Found at i:14737 original size:23 final size:23
Alignment explanation
Indices: 14682--14738 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 23
14672 GTCCCTGATA
*
14682 ACCGCGTAGAAATGTCTCGAAGG
1 ACCGCGTAGAAATGTCCCGAAGG
* * *
14705 ACCACATAGAATTGTCCCGAAGG
1 ACCGCGTAGAAATGTCCCGAAGG
*
14728 ACCGTGTAGAA
1 ACCGCGTAGAA
14739 CCCTCGACTC
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.33, C:0.23, G:0.26, T:0.18
Consensus pattern (23 bp):
ACCGCGTAGAAATGTCCCGAAGG
Found at i:15515 original size:15 final size:15
Alignment explanation
Indices: 15495--15528 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
15485 GATACTTATA
15495 CCTTAGTATCGATAC
1 CCTTAGTATCGATAC
*
15510 CCTTAGTATCGATGC
1 CCTTAGTATCGATAC
15525 CCTT
1 CCTT
15529 CCTTTGGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.21, C:0.29, G:0.15, T:0.35
Consensus pattern (15 bp):
CCTTAGTATCGATAC
Found at i:19627 original size:23 final size:23
Alignment explanation
Indices: 19601--19663 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
19591 AGTATTATCT
*
19601 CGAAGGACCGCGTTGAAATGTCC
1 CGAAGGACCGCGTAGAAATGTCC
* ** *
19624 CGAAGTACCATGTAGAATTGTCC
1 CGAAGGACCGCGTAGAAATGTCC
19647 CGAAGGACCGCGTAGAA
1 CGAAGGACCGCGTAGAA
19664 CTCTCGACTC
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.30, C:0.24, G:0.29, T:0.17
Consensus pattern (23 bp):
CGAAGGACCGCGTAGAAATGTCC
Found at i:20446 original size:15 final size:15
Alignment explanation
Indices: 20422--20455 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
20412 GATACTTATA
*
20422 CCTTATTATCGATAC
1 CCTTAGTATCGATAC
*
20437 CCTTAGTATCGATGC
1 CCTTAGTATCGATAC
20452 CCTT
1 CCTT
20456 CCTTTGGCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.29, G:0.12, T:0.38
Consensus pattern (15 bp):
CCTTAGTATCGATAC
Found at i:23214 original size:60 final size:59
Alignment explanation
Indices: 23095--23275 Score: 317
Period size: 59 Copynumber: 3.1 Consensus size: 59
23085 GGAGGGTTGT
*
23095 TTAGAGCCATATTATCGAGTTTGCCTTTTCATTGCGACTAGGAGGGTCCGATAGGACAC
1 TTAGAGCCATATTATCGAGTTTGCCTTTTCATTGCGACTAGGAGGGTTCGATAGGACAC
*
23154 TTAGAGCCATATTATCGAGTTTGCCTTTTTTATTGCGACTAGGAGGGTTCGATAGGACAC
1 TTAGAGCCATATTATCGAGTTTGCC-TTTTCATTGCGACTAGGAGGGTTCGATAGGACAC
* *
23214 TTAGAGCCATATTATCGAGTTTGCCTTTTCATTGCTACTAGGAGGGTTCGATAGGATAC
1 TTAGAGCCATATTATCGAGTTTGCCTTTTCATTGCGACTAGGAGGGTTCGATAGGACAC
23273 TTA
1 TTA
23276 TCCATCTATT
Statistics
Matches: 116, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
59 59 0.51
60 57 0.49
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (59 bp):
TTAGAGCCATATTATCGAGTTTGCCTTTTCATTGCGACTAGGAGGGTTCGATAGGACAC
Found at i:31751 original size:24 final size:24
Alignment explanation
Indices: 31724--31790 Score: 68
Period size: 24 Copynumber: 2.8 Consensus size: 24
31714 AGCTCGTATA
*
31724 AATTTGCACCGAAGTTCCACGTAG
1 AATTTGCACCGAAGTACCACGTAG
31748 AATTTGTC-CCGAAAG-ACCACGTAG
1 AATTTG-CACCG-AAGTACCACGTAG
* *
31772 AA-ATGCACCGAAGTGCCAC
1 AATTTGCACCGAAGTACCAC
31791 ATAATATGTC
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
22 4 0.11
23 9 0.25
24 19 0.53
25 4 0.11
ACGTcount: A:0.33, C:0.27, G:0.21, T:0.19
Consensus pattern (24 bp):
AATTTGCACCGAAGTACCACGTAG
Found at i:31812 original size:45 final size:46
Alignment explanation
Indices: 31728--31820 Score: 109
Period size: 45 Copynumber: 2.0 Consensus size: 46
31718 CGTATAAATT
* * *
31728 TGCACCGAAGTTCCACGTAGAATTTGTCCCGAAAGACCACGTAGAAA
1 TGCACCGAAGTGCCACG-AGAATATGTCCCGAAAGACCACATAGAAA
* *
31775 TGCACCGAAGTGCCAC-ATAATATGTCCC-TAAGCACCACATAGAAA
1 TGCACCGAAGTGCCACGAGAATATGTCCCGAAAG-ACCACATAGAAA
31820 T
1 T
31821 ACCTTAAGAA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
44 3 0.08
45 22 0.55
47 15 0.38
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.19
Consensus pattern (46 bp):
TGCACCGAAGTGCCACGAGAATATGTCCCGAAAGACCACATAGAAA
Found at i:37626 original size:10 final size:10
Alignment explanation
Indices: 37611--37637 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
37601 TAAAATACGT
37611 ATGAACAGTA
1 ATGAACAGTA
37621 ATGAACAGTA
1 ATGAACAGTA
37631 ATGAACA
1 ATGAACA
37638 ATAACCTGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.52, C:0.11, G:0.19, T:0.19
Consensus pattern (10 bp):
ATGAACAGTA
Found at i:37661 original size:25 final size:25
Alignment explanation
Indices: 37631--37700 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
37621 ATGAACAGTA
37631 ATGAACAATAACCTGCTACAGTACC
1 ATGAACAATAACCTGCTACAGTACC
37656 ATGAACAATAACCTGCTACAGTACC
1 ATGAACAATAACCTGCTACAGTACC
* *
37681 GTGAACAGTAACCTGCTACA
1 ATGAACAATAACCTGCTACA
37701 TTACTCTACT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.39, C:0.27, G:0.14, T:0.20
Consensus pattern (25 bp):
ATGAACAATAACCTGCTACAGTACC
Found at i:38406 original size:45 final size:46
Alignment explanation
Indices: 38316--38408 Score: 116
Period size: 45 Copynumber: 2.0 Consensus size: 46
38306 TGTATAAATT
* * * *
38316 TGCACCGAAGTGCCACATAGAATTTGTCCCGAAGGAACGCGTAGAAA
1 TGCACCGAAATGCCACATA-AATATGTCCCGAAGGAACACATAGAAA
* *
38363 TGCACCGAAATGCCACAT-AATATGTCCCTAAGGACCACATAGAAA
1 TGCACCGAAATGCCACATAAATATGTCCCGAAGGAACACATAGAAA
38408 T
1 T
38409 TCCTTAAGAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
45 23 0.57
47 17 0.43
ACGTcount: A:0.37, C:0.25, G:0.20, T:0.18
Consensus pattern (46 bp):
TGCACCGAAATGCCACATAAATATGTCCCGAAGGAACACATAGAAA
Found at i:50110 original size:37 final size:36
Alignment explanation
Indices: 50035--50110 Score: 100
Period size: 37 Copynumber: 2.1 Consensus size: 36
50025 TGAAACCGGG
*
50035 GCAATTGCAATTCAAAAATTGATACAGAGAGCAGAA
1 GCAATTGCAATTCAAAAATTGATACAGAGAGCAAAA
* *
50071 GCAATTGCAATTTAGAAAATTGATAC-GGGAAGCAAAA
1 GCAATTGCAATTCA-AAAATTGATACAGAG-AGCAAAA
50108 GCA
1 GCA
50111 TAAGCAATTG
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
36 15 0.43
37 20 0.57
ACGTcount: A:0.46, C:0.13, G:0.21, T:0.20
Consensus pattern (36 bp):
GCAATTGCAATTCAAAAATTGATACAGAGAGCAAAA
Found at i:50385 original size:18 final size:19
Alignment explanation
Indices: 50345--50390 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
50335 TTTGTTAACG
*
50345 TTATGATTGTTGTTATATTTA
1 TTAT-ATTGGTGTTATA-TTA
50366 TTATATTGGTGTTATA-TA
1 TTATATTGGTGTTATATTA
50384 TTATATT
1 TTATATT
50391 CTATTCTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 9 0.38
20 11 0.46
21 4 0.17
ACGTcount: A:0.26, C:0.00, G:0.13, T:0.61
Consensus pattern (19 bp):
TTATATTGGTGTTATATTA
Found at i:51947 original size:7 final size:7
Alignment explanation
Indices: 51934--51976 Score: 56
Period size: 6 Copynumber: 6.6 Consensus size: 7
51924 GAATAAACAA
51934 ATATTAT
1 ATATTAT
*
51941 TTATTAT
1 ATATTAT
51948 ATA-TAT
1 ATATTAT
51954 ATATTAT
1 ATATTAT
51961 ATA-TAT
1 ATATTAT
51967 ATA-TAT
1 ATATTAT
51973 ATAT
1 ATAT
51977 AAATAATAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 18 0.56
7 14 0.44
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
ATATTAT
Found at i:51952 original size:2 final size:2
Alignment explanation
Indices: 51945--51977 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
51935 TATTATTTAT
51945 TA TA TA TA TA TA T- TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
51978 AATAATAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:53287 original size:3 final size:3
Alignment explanation
Indices: 53279--53327 Score: 57
Period size: 3 Copynumber: 16.3 Consensus size: 3
53269 AATAGTTATT
*
53279 TAA TAA TAA TATA TAA T-A TAA T-A TATA TAT TAA TAA TAA TAA TAA
1 TAA TAA TAA TA-A TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA
53324 TAA T
1 TAA T
53328 GAAAAATGAA
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
2 4 0.10
3 30 0.75
4 6 0.15
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (3 bp):
TAA
Found at i:53301 original size:12 final size:13
Alignment explanation
Indices: 53279--53327 Score: 66
Period size: 12 Copynumber: 3.8 Consensus size: 13
53269 AATAGTTATT
53279 TAATAATAATATA
1 TAATAATAATATA
53292 TAAT-ATAATATA
1 TAATAATAATATA
53304 TATATTAATAATA-A
1 TA-A-TAATAATATA
53318 TAATAATAAT
1 TAATAATAAT
53328 GAAAAATGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
12 17 0.52
13 6 0.18
14 4 0.12
15 6 0.18
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
TAATAATAATATA
Found at i:53673 original size:75 final size:76
Alignment explanation
Indices: 53480--53888 Score: 759
Period size: 76 Copynumber: 5.4 Consensus size: 76
53470 GAGGTCCTAA
* *
53480 AAACATCATGCACTGAAGGGCTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
53545 AGGCTTTTTGG
66 AGGCTTTTTGG
*
53556 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
53621 AGGC-TTTTGG
66 AGGCTTTTTGG
53631 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
53696 AGGCTTTTTGG
66 AGGCTTTTTGG
*
53707 AAA-ATCATGCATTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
53771 AGGCTTTTTGG
66 AGGCTTTTTGG
53782 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
53847 AGGCTTTTTGG
66 AGGCTTTTTGG
*
53858 AAACATCATGAACTGTAGGACTTACAGATGA
1 AAACATCATGCACTGTAGGACTTACAGATGA
53889 GAAACTATGA
Statistics
Matches: 325, Mismatches: 6, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
75 148 0.46
76 177 0.54
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.23
Consensus pattern (76 bp):
AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
AGGCTTTTTGG
Found at i:53780 original size:151 final size:151
Alignment explanation
Indices: 53480--53888 Score: 757
Period size: 151 Copynumber: 2.7 Consensus size: 151
53470 GAGGTCCTAA
* *
53480 AAACATCATGCACTGAAGGGCTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
*
53545 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
66 AGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
53610 AAAGCTCCCGAAGGCTTTTGG
131 AAAGCTCCCGAAGGCTTTTGG
53631 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
*
53696 AGGCTTTTTGGAAA-ATCATGCATTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
66 AGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
53760 AAAGCTCCCGAAGGCTTTTTGG
131 AAAGCTCCCGAAGGC-TTTTGG
53782 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
*
53847 AGGCTTTTTGGAAACATCATGAACTGTAGGACTTACAGATGA
66 AGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGA
53889 GAAACTATGA
Statistics
Matches: 250, Mismatches: 6, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
150 63 0.25
151 162 0.65
152 25 0.10
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.23
Consensus pattern (151 bp):
AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
AGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAA
AAAGCTCCCGAAGGCTTTTGG
Found at i:54665 original size:22 final size:22
Alignment explanation
Indices: 54640--54691 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
54630 AAAGCTTTCC
54640 TCTTTGAAAAGAGAATCTATCA
1 TCTTTGAAAAGAGAATCTATCA
*
54662 TCTTTAAAAAGAGAATCTATCA
1 TCTTTGAAAAGAGAATCTATCA
54684 TCTTTGAA
1 TCTTTGAA
54692 GAGTGTAGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (22 bp):
TCTTTGAAAAGAGAATCTATCA
Found at i:57411 original size:113 final size:108
Alignment explanation
Indices: 57208--57416 Score: 274
Period size: 113 Copynumber: 1.9 Consensus size: 108
57198 GATCATGCAG
* * * * *
57208 TTCATCTTTTAATTCCAATGATTGGTTCTGGGGTCTTACCGAACCAAATTAGATAACTCAAAAAC
1 TTCATCTTTCAAATCCAATGATTGGTTCTGGGGTCATACCAAACCAAATCAGATAACTCAAAAAC
* *
57273 TTCTAGAAGATGCTATTGGGTCTCCTTATTTACTATGAGCAAA
66 TTCCAGAAGATGCTATTAGGTCTCCTTATTTACTATGAGCAAA
* * * *
57316 TTCATCTTTCAAATCTAATGATTGGTTTTGGGGTTTCATACCAAATCAGATCAGATAACTCAAAG
1 TTCATCTTTCAAATCCAATGATTGGTTCTGGGG--TCATACCAAACCAAATCAGATAACTC-AA-
57381 AACACTTCCAGAAGATGCTATTAGGTCTCCTTATTT
62 AA-ACTTCCAGAAGATGCTATTAGGTCTCCTTATTT
57417 CTACTACGAG
Statistics
Matches: 85, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
108 29 0.34
110 21 0.25
111 2 0.02
112 2 0.02
113 31 0.36
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (108 bp):
TTCATCTTTCAAATCCAATGATTGGTTCTGGGGTCATACCAAACCAAATCAGATAACTCAAAAAC
TTCCAGAAGATGCTATTAGGTCTCCTTATTTACTATGAGCAAA
Done.