genome.fa.s4037.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004037.1 Hibiscus syriacus cultivar Beakdansim tig00008818_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77540

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4477--4550	35	2.1	35	85	5	96	37	4	1	56	1.27
4686--4740	22	2.6	21	81	16	60	41	1	0	56	1.10
6257--6312	20	3.0	18	85	10	76	48	8	10	32	1.69
8955--9023	34	2.1	33	83	2	84	24	24	15	34	1.95
10262--10331	30	2.3	30	95	0	122	40	7	17	35	1.77
20224--20263	17	2.4	17	91	0	62	0	57	0	42	0.98
20672--20719	21	2.3	21	96	0	87	39	4	27	29	1.75
22538--22606	24	3.0	23	83	8	86	18	24	26	30	1.98
23762--24099	29	11.8	29	75	12	173	37	7	0	53	1.37
23762--24084	58	5.6	58	74	10	218	38	8	0	52	1.37
23717--24103	197	1.9	199	91	2	627	37	8	0	52	1.37
24097--24184	30	2.9	30	78	6	97	37	11	1	50	1.46
24207--24280	26	2.8	26	87	4	103	37	1	2	58	1.21
24207--24296	26	3.6	25	80	12	87	36	1	2	60	1.17
24232--24309	26	3.1	24	81	17	70	38	1	1	58	1.14
24295--24337	23	1.9	22	86	13	61	55	2	4	37	1.33
30632--30706	38	2.0	37	84	5	98	46	4	1	48	1.29
32317--32806	228	2.1	228	93	1	849	45	7	7	39	1.61
32874--33348	181	2.6	182	88	1	686	42	14	16	26	1.86
33269--33315	20	2.4	19	79	10	58	53	8	17	21	1.70
35526--35569	21	2.1	21	91	0	70	40	11	31	15	1.83
35603--35668	33	2.0	33	90	0	105	28	0	48	22	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37455--37503	19	2.6	19	93	0	80	30	2	10	57	1.43
37622--38201	198	2.9	198	97	1	1090	36	15	17	31	1.91
38795--38831	18	2.1	18	89	0	56	32	5	10	51	1.60
38787--38833	24	2.0	24	86	0	67	34	4	14	46	1.64
39102--39188	39	2.2	39	93	0	147	49	20	12	17	1.79
39609--39681	23	3.2	23	86	0	92	35	4	20	39	1.72
39937--40010	21	3.3	21	67	26	62	58	12	5	24	1.55
39934--40025	46	2.0	46	100	0	184	56	13	4	26	1.55
40086--40158	23	3.2	23	88	0	101	34	4	21	39	1.73
39504--40455	477	2.0	475	97	0	1814	42	8	11	37	1.72
40516--40588	23	3.2	23	80	0	83	35	4	19	41	1.70
40516--40613	46	2.1	45	81	7	108	34	6	16	42	1.73
40947--41019	23	3.2	23	84	0	92	34	4	20	41	1.72
40947--41044	46	2.1	45	81	7	108	34	5	17	42	1.71
39980--42661	430	6.2	431	97	0	5118	41	7	12	39	1.71
39980--42661	861	3.1	862	98	0	5136	41	7	12	39	1.71
41377--41449	23	3.2	23	88	0	101	34	4	21	39	1.73
41808--41870	23	2.7	23	82	0	81	38	4	17	39	1.71
41808--41880	23	3.2	23	75	14	69	36	4	17	41	1.69
42238--42310	23	3.2	23	84	0	92	34	4	20	41	1.72
42238--42335	46	2.1	45	81	7	108	33	6	17	42	1.74
49924--49953	12	2.4	13	88	11	53	56	0	36	6	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50609--50667	31	1.9	31	96	0	109	42	6	8	42	1.61
52650--52809	65	2.5	64	87	7	218	27	18	22	31	1.97
58999--59429	218	2.0	218	100	0	862	23	20	16	39	1.92
61713--61871	65	2.5	64	84	7	198	27	17	22	33	1.96

Tables:   1

The End!