genome.fa.s4038.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004038.1 Hibiscus syriacus cultivar Beakdansim tig00008820_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  154161

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
730--789	29	2.1	29	84	3	77	20	3	3	73	1.12
1420--1513	49	1.9	50	86	4	138	24	21	5	48	1.70
1897--1935	20	2.0	20	94	0	69	35	10	23	30	1.88
10407--10445	20	2.0	20	89	0	60	33	10	23	33	1.88
12130--12168	20	2.0	20	84	0	51	69	12	0	17	1.19
13562--13644	3	27.7	3	92	0	139	62	0	2	34	1.08
13963--14408	113	4.0	113	95	0	750	29	18	13	38	1.90
15202--15459	83	3.1	83	96	0	464	35	22	13	29	1.92
16499--16550	10	5.1	10	79	4	59	3	15	0	80	0.85
27933--27971	20	2.0	20	84	0	51	69	12	0	17	1.19
29360--29457	3	32.7	3	91	0	160	62	0	2	35	1.07
36024--36067	2	22.0	2	100	0	88	50	0	0	50	1.00
40232--40262	2	16.0	2	93	6	55	48	0	0	51	1.00
42685--42839	40	3.8	40	82	4	186	37	26	18	18	1.93
42685--42838	20	7.7	20	80	7	168	37	26	18	18	1.93
42624--42755	60	2.2	59	82	6	151	40	28	16	14	1.88
43221--43291	33	2.2	33	92	0	115	11	22	18	47	1.80
43382--43490	19	5.9	19	78	12	129	44	20	23	11	1.83
43448--43504	14	3.7	14	75	20	60	43	22	24	8	1.81
43429--43520	33	2.8	33	96	0	166	45	23	21	8	1.80
43382--43490	52	2.0	55	89	10	170	44	20	23	11	1.83
43412--43520	52	2.1	52	83	6	132	44	23	22	9	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43516--43566	19	2.7	19	96	0	93	11	21	21	45	1.84
44179--44268	20	4.5	20	83	5	92	17	17	26	37	1.93
44255--44337	21	4.0	21	73	6	78	25	16	24	33	1.96
44235--44333	42	2.4	43	77	11	100	21	18	23	37	1.94
46983--47290	149	2.1	150	88	1	449	41	9	13	35	1.77
46980--47290	75	4.2	75	82	2	385	41	9	13	35	1.77
47265--47336	23	3.1	23	83	0	81	40	15	11	33	1.82
47200--47457	121	2.1	121	89	1	392	39	12	13	34	1.82
47386--47480	23	4.1	23	88	0	127	35	17	14	31	1.91
47286--47601	144	2.2	144	89	0	470	38	13	13	34	1.84
47409--47650	121	2.0	121	86	1	333	38	12	14	35	1.84
47530--47601	23	3.1	23	77	0	81	36	12	13	37	1.83
53842--53903	3	20.7	3	74	12	56	30	3	3	62	1.26
55086--55132	20	2.4	19	80	16	51	25	2	14	57	1.49
59561--59601	11	3.6	11	87	6	55	70	9	14	4	1.30
60756--60819	4	16.5	4	93	6	114	50	25	0	25	1.50
61351--61590	30	7.3	30	64	18	102	32	12	12	41	1.81
61350--61645	67	4.4	67	99	0	574	31	13	11	43	1.80
62618--62699	28	2.9	28	83	3	94	24	12	13	50	1.76
62728--62918	40	4.6	40	72	14	143	24	30	18	26	1.98
62745--63039	133	2.3	129	88	7	418	25	31	17	25	1.97
62884--63094	91	2.3	92	83	2	273	26	32	17	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63250--63311	3	20.7	3	74	12	56	30	3	3	62	1.26
64489--64535	20	2.4	19	80	16	51	25	2	14	57	1.49
67332--67362	2	15.5	2	100	0	62	48	0	0	51	1.00
71849--71931	29	2.9	29	96	0	148	40	15	10	32	1.82
72841--73218	141	2.7	140	83	3	442	21	30	14	34	1.93
74685--74751	31	2.2	31	91	0	107	35	13	26	23	1.92
78632--78699	35	1.9	35	87	0	100	45	22	0	32	1.52
80896--80922	14	1.9	14	100	0	54	37	11	0	51	1.37
82961--83055	48	2.0	48	97	0	181	30	20	13	35	1.91
86747--86778	14	2.3	14	94	0	55	37	9	0	53	1.34
86803--86828	4	6.5	4	100	0	52	23	0	0	76	0.78
86936--86991	27	2.0	29	83	10	73	58	1	1	37	1.19
92728--92804	37	2.1	37	85	4	102	48	1	3	46	1.28
94774--94802	5	5.8	5	100	0	58	17	0	0	82	0.66
98760--98791	15	2.1	15	100	0	64	56	6	6	31	1.49
100434--100499	32	2.1	32	100	0	132	33	3	21	42	1.68
102397--102463	16	4.3	16	92	3	111	11	10	17	59	1.60
102394--102455	32	1.9	32	100	0	124	9	12	20	56	1.65
115186--115212	2	13.5	2	100	0	54	48	0	0	51	1.00
122605--122663	23	2.6	23	81	5	66	57	0	0	42	0.98
122609--122650	20	2.1	20	86	8	59	57	0	0	42	0.99
123003--123058	23	2.3	23	84	6	67	48	0	1	50	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125952--126258	158	1.9	153	87	7	436	17	28	14	38	1.90
128067--129178	6	186.2	6	99	0	2189	66	16	0	16	1.25
130903--130939	19	1.9	19	94	0	65	32	29	16	21	1.95
130965--131051	21	4.2	20	76	2	66	28	19	19	32	1.96
131068--131112	20	2.2	20	92	0	72	24	26	20	28	1.99
131941--131990	24	2.1	24	88	0	73	22	20	22	36	1.96
132180--132216	14	2.6	14	91	4	56	51	21	21	5	1.68
134438--134534	20	4.8	20	88	0	140	31	18	19	29	1.96
134577--134628	20	2.6	20	78	6	52	9	19	25	46	1.80
134682--134859	71	2.6	68	83	7	191	52	16	1	29	1.54
136171--136271	21	4.8	21	71	4	87	23	18	35	21	1.96
136149--136271	42	2.9	41	78	4	129	23	17	35	22	1.95
136757--136805	20	2.5	20	86	0	71	38	26	16	18	1.91
136849--136886	20	1.9	20	94	0	67	13	21	18	47	1.82
136897--136934	20	1.9	19	94	5	67	23	26	23	26	2.00
138867--138971	20	5.3	20	79	3	70	44	20	17	18	1.87
138882--138973	20	4.7	19	80	6	78	44	19	17	18	1.87
139362--139412	22	2.3	22	86	0	66	21	9	43	25	1.83
139564--139713	20	7.3	20	68	11	79	22	16	24	37	1.93
139564--139713	41	3.6	41	85	4	178	22	16	24	37	1.93
140712--140806	50	1.9	50	80	4	111	15	26	31	26	1.96
143035--143123	34	2.6	34	82	5	99	62	14	2	20	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145379--145429	16	3.2	16	83	5	59	66	1	0	31	1.03
145393--145431	17	2.4	16	86	4	51	66	2	0	30	1.05
146819--147368	226	2.4	227	88	1	782	39	13	14	32	1.86
148105--148173	23	3.0	23	84	0	93	28	26	27	17	1.97
148929--148970	2	21.0	2	100	0	84	50	0	0	50	1.00
152566--152603	16	2.4	16	100	0	76	21	0	31	47	1.51
153689--153719	2	15.5	2	100	0	62	51	0	0	48	1.00

Tables:   1

The End!