genome.fa.s404.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000404.1 Hibiscus syriacus cultivar Beakdansim tig00000745_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123496

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11363--11399	17	2.1	19	85	10	51	43	0	2	54	1.14
14177--14201	12	2.1	12	100	0	50	60	8	0	32	1.26
14757--14806	21	2.4	21	89	0	82	22	0	16	62	1.33
25122--25181	27	2.2	27	85	5	77	18	16	48	16	1.82
25123--25191	27	2.6	27	80	0	66	18	18	46	15	1.84
26627--26684	3	19.7	3	86	10	66	41	0	0	58	0.98
26626--26684	27	2.2	25	88	8	82	42	0	0	57	0.98
26638--26694	27	2.1	27	86	3	78	42	1	0	56	1.10
27806--27861	27	2.0	27	86	6	76	19	16	8	55	1.67
28155--28185	15	2.0	16	93	6	55	22	0	0	77	0.77
33620--33663	16	2.8	16	96	0	79	50	27	0	22	1.50
33974--34077	36	3.0	35	81	4	120	33	18	12	35	1.88
34047--34455	105	3.9	106	85	4	551	32	16	11	39	1.84
34047--34455	211	1.9	210	85	3	563	32	16	11	39	1.84
34910--35073	28	5.9	28	87	0	175	22	15	14	46	1.82
35092--35388	40	6.8	40	68	20	175	23	33	18	23	1.97
35185--35354	51	3.6	50	68	18	146	23	32	18	25	1.97
35132--35386	91	2.8	91	89	4	370	23	33	19	23	1.97
35276--35660	133	2.9	133	86	3	540	25	30	18	24	1.98
35855--35930	3	25.7	3	86	7	93	40	0	0	59	0.98
35856--35930	27	2.8	27	89	4	107	41	0	0	58	0.98
35854--35940	21	4.0	21	81	14	72	42	1	0	56	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35854--35940	27	3.2	26	76	16	88	42	1	0	56	1.07
38620--38671	9	6.1	9	78	13	65	65	1	0	32	1.04
38617--38669	16	3.2	17	86	10	74	67	1	0	30	1.01
38623--38672	17	3.0	17	94	2	84	62	4	0	34	1.14
39922--39961	18	2.2	19	86	4	55	52	5	10	32	1.56
52694--52720	12	2.2	12	100	0	54	51	14	7	25	1.68
53740--53784	20	2.1	21	92	8	74	46	2	0	51	1.13
57711--57823	35	3.2	34	88	5	163	42	23	0	33	1.60
58875--58986	35	3.2	34	88	5	145	35	0	20	42	1.58
59469--59626	21	7.8	20	72	7	86	38	25	17	18	1.92
59593--59786	20	9.6	20	81	5	221	35	25	19	19	1.95
59593--59786	60	3.2	60	83	0	253	35	25	19	19	1.95
60168--60238	33	2.2	33	94	0	124	11	23	16	47	1.79
60318--60425	19	5.8	20	72	17	97	44	19	24	12	1.84
60376--60432	14	3.7	14	75	20	60	43	22	24	8	1.81
60330--60448	33	3.4	33	90	6	166	45	21	22	10	1.82
60444--60546	19	5.9	19	74	19	100	10	24	21	43	1.84
60444--60549	52	2.0	52	94	0	185	10	24	20	44	1.83
62240--62806	93	6.1	93	99	0	1107	22	12	19	45	1.83
62850--62978	19	7.3	19	74	17	116	44	28	17	9	1.79
62886--62978	33	2.8	32	88	4	141	45	27	18	8	1.78
62850--62978	52	2.5	52	73	14	131	44	28	17	9	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62974--63108	19	7.6	19	75	16	128	11	19	23	45	1.82
62996--63052	14	3.7	14	77	20	60	10	21	22	45	1.82
62979--63071	33	2.8	33	95	0	168	10	20	21	47	1.80
65022--65057	14	2.6	14	95	0	63	33	0	22	44	1.53
65164--65263	19	5.5	19	84	12	147	45	17	23	15	1.85
65164--65280	53	2.2	53	95	1	209	43	17	24	14	1.86
65270--65418	19	8.6	19	73	21	139	15	22	18	43	1.87
65270--65386	52	2.2	52	95	0	207	16	21	17	44	1.87
65327--65418	33	2.8	33	98	1	175	13	23	18	44	1.85
65346--65400	14	3.6	14	73	21	56	10	23	20	45	1.82
65477--65574	19	5.4	19	84	13	143	45	17	22	14	1.84
65477--65593	53	2.2	53	98	1	227	44	17	23	13	1.85
67909--67933	12	2.1	12	100	0	50	0	28	0	72	0.86
68108--68154	24	2.0	24	87	8	69	38	21	14	25	1.92
68837--69086	20	12.5	20	87	1	268	19	18	24	37	1.94
69073--69155	21	4.0	21	73	6	78	25	16	24	33	1.96
69053--69151	42	2.4	43	77	11	100	21	18	23	37	1.94
91650--91702	21	2.5	21	84	0	70	20	26	18	33	1.96
91692--91765	20	3.7	20	74	3	85	37	20	20	21	1.94
91962--92023	18	3.0	22	69	26	62	27	38	16	17	1.91
92355--92403	20	2.5	20	86	0	71	34	24	20	20	1.96
92445--92494	20	2.5	20	90	0	73	18	18	28	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92462--92516	20	2.8	20	88	0	74	10	14	23	50	1.74
94389--94492	20	5.5	20	77	13	121	42	21	18	18	1.90
94396--94513	54	2.2	54	90	0	182	44	19	19	16	1.87
94539--94585	20	2.3	20	85	0	58	21	17	23	38	1.93
94559--94652	33	2.8	34	77	3	109	12	19	23	44	1.85
94624--94672	20	2.5	20	96	0	89	16	20	24	38	1.92
94624--94682	20	3.0	20	87	0	55	16	18	22	42	1.89
95174--95243	21	3.6	18	70	20	59	25	41	11	21	1.86
95184--95244	21	2.9	22	73	7	63	26	40	13	19	1.88
95156--95274	42	2.8	42	77	9	118	25	35	15	23	1.95
96618--96653	14	2.6	14	90	0	54	30	0	22	47	1.52
96766--96833	33	2.1	33	88	0	100	41	17	25	16	1.89
96823--96873	19	2.7	19	93	0	84	19	21	15	43	1.88
96878--96971	20	4.7	20	93	0	161	18	23	24	34	1.96
99172--99225	24	2.2	24	93	0	90	40	20	18	20	1.91
99172--99239	24	2.8	24	84	0	64	38	20	17	23	1.93
100087--100233	20	7.3	20	87	3	206	22	20	20	36	1.95
100223--100275	21	2.5	21	90	0	79	33	16	26	22	1.96
104465--104546	41	2.0	41	95	0	146	28	23	17	31	1.96
108322--108829	165	3.0	170	91	4	864	28	22	19	30	1.98
118000--118052	26	2.0	28	85	7	74	32	3	1	62	1.24
123402--123446	17	2.6	17	89	10	74	71	0	0	28	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123409--123447	16	2.4	16	91	0	69	69	0	0	30	0.89
123409--123459	16	3.3	15	83	13	59	70	0	0	29	0.87

Tables:   1

The End!