genome.fa.s4040.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004040.1 Hibiscus syriacus cultivar Beakdansim tig00008825_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53414

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
515--553	16	2.7	14	85	14	53	48	7	10	33	1.66
524--555	16	2.0	16	100	0	64	50	6	12	31	1.65
1167--1448	49	5.8	49	90	4	430	24	20	15	39	1.92
1167--1448	143	1.9	146	88	4	428	24	20	15	39	1.92
7291--7429	49	2.8	48	80	8	156	27	15	13	43	1.85
10010--10330	108	3.0	108	92	0	518	30	10	22	35	1.89
12099--12173	28	2.7	28	83	2	89	30	16	29	24	1.96
14733--14811	39	2.0	39	95	0	140	26	35	13	24	1.93
16258--16284	13	2.1	13	100	0	54	37	0	14	48	1.45
19357--19382	3	8.7	3	100	0	52	69	30	0	0	0.89
25205--25241	12	3.1	12	88	0	56	32	54	0	13	1.40
25204--25255	24	2.2	23	82	3	59	32	48	0	19	1.49
26441--26486	13	3.5	13	84	3	56	15	0	26	58	1.37
32416--32447	3	10.7	3	100	0	64	31	0	0	68	0.90
34843--34884	22	2.0	20	90	9	66	52	14	7	26	1.67
35060--35141	21	4.0	20	73	12	76	24	25	18	31	1.97
35148--35201	21	2.6	21	100	0	108	42	16	18	22	1.89
35213--35279	21	3.2	21	78	4	73	22	22	16	38	1.92
35275--35369	21	4.6	21	85	3	122	40	15	21	23	1.91
35131--35369	41	5.8	42	69	9	125	35	17	18	27	1.94
35901--35985	19	4.7	19	71	20	74	47	23	18	10	1.80
36003--36124	14	7.6	14	68	24	64	9	22	22	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35986--36173	33	5.5	33	90	5	259	11	22	20	45	1.82
36116--36173	20	2.9	20	82	10	73	13	22	18	44	1.85
38303--38369	21	3.2	21	64	6	55	25	35	19	19	1.95
38281--38369	42	2.1	42	83	8	110	24	35	19	20	1.95
39719--39754	14	2.6	14	95	0	63	30	0	25	44	1.54
39861--39952	19	5.4	19	71	24	96	45	18	20	15	1.85
39861--39986	33	3.8	33	91	2	182	46	20	19	13	1.83
39957--39997	19	2.2	19	86	0	55	56	19	12	12	1.67
40004--40095	33	2.8	33	91	0	148	13	22	17	46	1.82
40037--40095	19	3.4	19	68	22	56	15	22	16	45	1.84
40089--40161	20	3.6	20	68	17	60	24	16	24	34	1.95
43440--43488	21	2.4	21	79	3	55	42	16	20	20	1.89
43473--43564	20	4.6	20	73	2	76	39	21	18	20	1.93
43764--43793	14	2.1	14	93	0	51	36	23	30	10	1.87
43778--43865	20	4.4	20	75	5	88	37	21	23	17	1.94
43911--43959	19	2.6	19	100	0	98	14	20	16	48	1.80
45908--46014	20	5.4	20	85	1	126	37	25	20	16	1.93
46003--46127	14	7.9	14	71	23	88	48	22	17	11	1.78
45987--46132	33	4.4	33	99	0	283	47	21	18	11	1.80
46139--46221	19	4.6	19	78	14	104	13	19	20	46	1.82
46800--46847	18	2.7	18	93	0	87	14	12	45	27	1.81
48167--48225	20	3.0	20	87	0	73	44	22	18	15	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48474--48517	22	2.0	22	95	0	79	18	15	45	20	1.85
48711--48773	20	3.1	21	82	8	78	30	12	26	30	1.93
48744--48821	41	1.9	41	89	0	120	20	14	26	38	1.91
48742--48814	20	3.6	20	75	10	67	21	13	28	35	1.92
48826--48878	20	2.7	20	90	0	88	24	20	13	41	1.88
48868--48920	21	2.5	20	79	8	70	33	18	26	20	1.96
49605--49647	22	1.9	22	85	4	59	27	18	20	32	1.96

Tables:   1

The End!