Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004043.1 Hibiscus syriacus cultivar Beakdansim tig00008833_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60924

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
495--761
145
1.8
145
81
3
331
37
18
23
20
1.94
1368--1430
26
2.4
27
94
2
110
31
11
7
49
1.67
2068--2094
10
2.7
10
100
0
54
81
0
18
0
0.69
2061--2124
18
3.6
18
74
17
62
78
3
18
0
0.89
3571--3764
37
5.3
36
74
6
176
34
18
10
37
1.84
3564--3760
73
2.7
74
92
1
308
34
18
10
36
1.86
3776--4437
139
4.9
137
76
9
583
36
16
20
26
1.94
4377--4471
39
2.5
39
83
11
117
52
9
17
20
1.72
5664--5709
23
2.0
24
86
4
67
32
19
26
21
1.97
5961--6059
44
2.2
44
96
0
180
25
21
7
46
1.76
9791--9837
20
2.3
20
89
7
69
19
19
14
46
1.84
9806--9844
20
2.0
19
85
5
51
28
15
12
43
1.83
10849--10948
11
8.9
11
75
16
80
75
9
13
3
1.16
10889--10948
21
3.0
21
80
11
72
78
8
11
1
1.03
12458--12499
22
1.9
22
85
0
57
33
16
11
38
1.86
12468--12662
73
2.6
74
91
2
304
33
17
11
37
1.85
12678--13087
138
3.0
139
88
0
624
35
17
20
25
1.95
13282--13379
39
2.5
39
86
3
126
47
11
21
19
1.80
14548--14605
31
1.9
30
83
13
75
24
8
6
60
1.51
17660--17684
12
2.1
12
100
0
50
84
8
8
0
0.79
19377--19437
24
2.8
22
78
9
63
34
19
19
26
1.96
21548--21578
15
2.1
15
93
0
53
16
29
0
54
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30022--30064
21
2.0
21
81
0
50
27
30
25
16
1.97
30092--30129
20
1.9
20
88
0
58
23
34
31
10
1.89
30738--30792
23
2.4
23
87
0
74
21
29
23
25
1.99
31235--31266
2
16.0
2
100
0
64
50
0
0
50
1.00
33276--33305
3
10.0
3
92
0
51
30
0
3
66
1.07
35189--35267
39
2.0
39
100
0
158
34
10
27
27
1.89
36066--36133
26
2.6
26
86
6
84
42
13
8
35
1.75
36289--36328
21
1.9
21
94
0
71
37
50
0
12
1.41
36286--36325
18
2.2
18
86
0
53
37
50
0
12
1.41
37899--37938
21
1.9
21
94
0
71
37
50
0
12
1.41
37896--37935
18
2.2
18
86
0
53
37
50
0
12
1.41
38492--38566
3
25.0
3
94
0
78
33
10
0
56
1.34
45401--45425
3
8.3
3
100
0
50
32
0
0
68
0.90
46296--46445
40
3.6
40
73
14
106
34
10
25
30
1.90
47663--48352
89
7.8
88
76
8
580
31
18
20
29
1.97
47660--48260
267
2.2
266
81
3
688
31
18
21
28
1.97
48320--48676
82
4.4
81
81
3
409
38
21
18
21
1.93
52274--52318
22
2.0
22
83
8
56
37
4
13
44
1.64
54733--54799
2
33.5
2
100
0
134
49
0
0
50
1.00

Tables:   1

The End!