genome.fa.s4045.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004045.1 Hibiscus syriacus cultivar Beakdansim tig00008835_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122605

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
919--951	16	2.0	17	88	5	50	36	9	12	42	1.74
1104--1176	24	3.0	24	87	0	110	23	8	16	52	1.70
4602--4640	9	4.2	9	80	6	51	30	0	7	61	1.24
4642--4694	17	3.2	17	83	5	72	45	0	0	54	0.99
5517--5554	18	2.1	18	95	0	67	31	13	5	50	1.63
11783--11835	21	2.3	23	78	18	58	35	9	1	52	1.45
16794--16823	3	10.0	3	100	0	60	33	0	0	66	0.92
24739--24767	14	2.0	15	93	6	51	27	31	27	13	1.94
33597--34091	229	2.2	229	96	1	904	44	7	7	39	1.62
34371--34416	20	2.3	19	89	10	74	56	10	15	17	1.67
34550--34596	20	2.4	19	82	10	67	53	10	17	19	1.72
34158--34629	180	2.6	182	88	2	673	42	14	16	27	1.86
34559--34601	20	2.3	19	88	11	63	51	11	16	20	1.75
36817--36860	21	2.1	21	86	0	61	43	9	31	15	1.79
36894--36959	33	2.0	33	90	0	105	28	0	48	22	1.51
38473--38521	19	2.6	19	86	0	71	30	2	8	59	1.38
38640--40008	199	6.9	200	95	1	2421	37	15	17	29	1.90
38640--40008	596	2.3	596	96	0	2528	37	15	17	29	1.90
41446--41654	65	3.2	64	80	8	210	29	24	18	27	1.98
44625--44668	21	2.1	21	86	0	61	9	36	15	38	1.80
45697--45747	19	2.7	19	80	19	63	23	33	15	27	1.95
45646--45855	65	3.2	64	79	11	214	30	25	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45646--45875	64	3.6	64	79	8	218	29	25	17	27	1.98
46853--46916	18	3.6	18	82	0	92	39	7	32	20	1.81
46870--46941	3	24.0	3	79	0	81	36	5	33	25	1.79
46853--46934	36	2.3	36	93	0	137	37	7	32	21	1.81
46853--46941	12	7.4	12	83	0	88	37	6	32	23	1.81
48135--48168	16	2.1	16	94	0	59	47	5	20	26	1.73
48529--48601	23	3.2	23	88	0	101	34	4	21	39	1.73
48957--49029	23	3.2	23	84	0	92	35	4	20	39	1.72
49389--49461	23	3.2	23	84	0	92	34	4	20	41	1.72
48322--49802	428	3.5	431	96	1	2762	41	7	12	38	1.72
49389--49486	46	2.1	45	81	7	108	34	5	17	42	1.71
52749--52816	23	3.0	23	88	0	100	33	4	22	39	1.74
53168--53240	23	3.2	23	84	0	92	35	4	20	39	1.72
52461--53833	428	3.2	427	96	2	2498	39	7	12	40	1.71
53596--53668	23	3.2	23	84	0	92	34	4	20	41	1.72
53596--53693	46	2.1	45	81	7	108	33	6	17	42	1.74
63057--63105	15	3.3	15	91	5	73	10	12	65	12	1.48
66250--66300	26	2.0	26	84	7	68	43	17	7	31	1.78
69979--70070	19	4.7	20	74	14	75	41	2	1	55	1.19
69979--70040	23	2.9	22	83	7	74	38	1	1	58	1.18
71554--71625	23	3.1	23	100	0	144	26	26	12	34	1.92
73834--73874	18	2.3	18	91	0	64	2	29	26	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75906--76237	165	2.0	166	97	2	632	38	6	22	32	1.80
82039--82094	22	2.5	22	100	0	112	14	23	44	17	1.85
82968--83160	104	1.9	102	81	8	239	35	13	10	40	1.79
83107--83437	67	5.0	67	88	2	425	33	15	11	39	1.83
85647--85686	2	20.0	2	100	0	80	50	0	0	50	1.00
86664--86703	19	2.0	20	85	4	55	37	2	12	47	1.55
86664--86704	20	2.0	20	86	9	57	36	2	12	48	1.54
88321--88369	24	2.0	24	84	7	64	16	10	38	34	1.82
90597--90650	20	2.7	20	91	0	90	31	27	1	38	1.67
94997--95033	18	2.1	18	89	0	56	32	10	16	40	1.83
96804--96868	20	3.2	20	75	12	69	30	29	16	23	1.96
97689--97742	24	2.2	24	93	0	90	20	18	20	40	1.91
97932--97968	14	2.6	14	91	4	56	51	21	21	5	1.68
100004--100042	12	3.2	12	85	0	51	56	25	0	17	1.41
100005--100039	18	1.9	18	94	0	61	57	22	0	20	1.41
100097--100379	140	2.0	140	95	0	512	28	10	15	44	1.80
100350--100486	20	6.8	20	92	0	220	31	21	20	27	1.98
100525--100582	20	2.9	21	82	10	77	12	17	27	43	1.84
100702--100738	14	2.6	14	100	0	74	48	21	0	29	1.50
102109--102229	42	2.9	42	82	2	136	24	18	34	22	1.96
102148--102221	21	3.5	21	72	7	69	22	17	37	21	1.94
102707--102750	20	2.2	20	95	0	79	50	22	13	13	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102737--102804	20	3.4	20	91	0	109	36	26	19	17	1.94
102835--102879	19	2.4	19	81	3	56	44	24	15	15	1.85
102875--102912	20	1.9	20	88	0	58	10	23	18	47	1.79
102879--102952	33	2.2	34	90	2	114	10	24	20	44	1.83
102946--102994	20	2.5	20	89	0	71	20	20	24	34	1.96
103891--104246	178	2.0	177	97	0	667	42	12	12	32	1.80
104295--104380	20	4.4	20	80	4	95	48	20	16	13	1.80
104295--104380	19	4.4	19	82	4	84	48	20	16	13	1.80
104755--104800	22	2.1	22	87	0	65	23	15	41	19	1.89
104966--105031	20	3.2	20	77	12	71	24	18	28	28	1.98
104934--105051	41	2.9	41	79	0	137	27	18	22	30	1.98
104977--105044	21	3.3	21	74	12	68	25	19	23	32	1.97
108789--108818	16	1.9	16	93	6	53	26	0	3	70	1.03
117970--118020	18	2.8	18	90	0	75	35	15	17	31	1.92
117974--118028	18	3.1	18	78	5	58	38	14	18	29	1.90
119518--119561	2	22.5	2	95	4	81	50	0	0	50	1.00
120298--120347	20	2.5	20	77	6	57	40	2	0	58	1.10
120376--120416	21	1.9	22	85	5	57	34	0	4	60	1.18

Tables:   1

The End!