genome.fa.s4046.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004046.1 Hibiscus syriacus cultivar Beakdansim tig00008837_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85984

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2549--2835	6	49.5	6	86	10	348	0	45	0	54	1.00
2903--2945	22	2.0	21	86	8	61	30	16	2	51	1.57
4798--4833	17	2.1	17	90	10	56	41	0	5	52	1.24
5885--5966	37	2.2	37	93	0	137	28	19	26	25	1.99
16257--16291	16	2.1	18	89	10	56	65	0	8	25	1.21
16399--16433	2	17.5	2	93	0	61	54	0	0	45	0.99
16846--16978	37	3.8	37	80	10	138	32	12	13	42	1.81
27758--27886	59	2.2	59	95	2	233	48	19	7	24	1.75
30181--30205	11	2.3	11	100	0	50	28	28	16	28	1.97
34191--34263	36	1.9	39	83	8	98	42	35	4	17	1.69
38797--38950	31	5.0	31	92	1	247	20	19	23	37	1.95
43308--43461	31	5.0	31	92	1	247	20	19	23	37	1.95
46858--46917	2	30.0	2	100	0	120	50	0	0	50	1.00
52313--52357	16	2.7	17	82	6	56	37	2	0	60	1.09
58689--58713	5	5.0	5	100	0	50	40	0	0	60	0.97
58709--58735	7	3.9	7	100	0	54	44	0	0	55	0.99
58707--58747	14	2.9	15	85	7	59	46	0	0	53	1.00
59466--59561	45	2.1	45	98	0	183	34	0	15	50	1.45
60226--60594	40	9.2	40	88	2	433	34	26	18	20	1.96
60226--60594	60	6.2	60	84	5	433	34	26	18	20	1.96
60264--60594	20	16.6	19	85	5	367	33	25	19	21	1.97
61276--61322	24	2.0	24	87	8	69	25	14	21	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61495--61519	12	2.1	12	100	0	50	72	0	28	0	0.86
63818--64100	19	15.7	19	86	11	418	46	16	21	14	1.83
64129--64229	19	5.6	19	85	12	142	14	23	17	43	1.87
64336--64371	14	2.6	14	86	4	56	47	22	0	30	1.52
66324--66380	14	3.7	14	77	20	60	45	22	21	10	1.82
66305--66397	33	2.8	33	95	0	168	47	21	20	10	1.80
66268--66402	19	7.6	19	76	16	128	45	23	19	11	1.82
66398--66493	19	5.3	19	78	13	103	9	16	28	45	1.78
66537--67098	93	6.1	93	97	2	1062	46	18	12	22	1.83
66537--67098	184	3.0	185	97	1	1051	46	18	12	22	1.83
66537--67098	276	2.0	276	97	1	1072	46	18	12	22	1.83
68800--68889	14	5.7	14	74	23	81	42	23	25	8	1.83
68792--68906	33	3.5	33	95	0	212	45	20	24	9	1.81
68799--68911	19	6.8	18	72	23	88	43	22	24	9	1.83
68923--68977	14	3.6	14	73	21	56	9	25	23	41	1.83
68907--68977	33	2.2	33	94	0	124	8	22	25	43	1.81
68918--68999	33	2.5	33	89	2	119	9	25	21	42	1.84
68930--69018	20	4.8	20	72	19	75	12	24	19	43	1.85
69097--69167	33	2.2	33	92	0	115	47	18	22	11	1.80
69348--69401	22	2.5	22	81	3	74	20	14	40	24	1.90
69543--69735	20	9.6	20	82	5	219	19	19	25	35	1.95
69543--69735	60	3.2	60	83	0	251	19	19	25	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69791--69842	20	2.6	20	96	0	95	21	13	26	38	1.90
70639--70691	21	2.5	21	87	0	79	22	22	16	37	1.94
70681--70726	20	2.3	20	100	0	92	39	17	19	23	1.92
70700--70791	40	2.3	40	81	3	105	32	26	18	22	1.97
70720--70792	20	3.7	20	92	0	119	30	28	17	23	1.97
71618--71668	24	2.2	22	82	6	57	23	19	17	39	1.92
73906--73945	18	2.2	18	90	0	62	52	27	2	17	1.57
74111--74261	20	7.8	20	81	8	170	31	23	19	25	1.98
74119--74311	74	2.6	74	86	4	257	32	23	20	23	1.98
74283--74358	20	3.8	20	82	0	80	17	18	26	38	1.92
74462--74516	29	1.9	28	85	3	74	47	18	0	34	1.49
74457--74518	14	4.3	14	79	6	70	46	16	0	37	1.47
75918--76029	42	2.7	42	76	5	111	22	18	39	19	1.93
76585--76655	20	3.5	20	92	0	106	21	18	23	36	1.95
76803--76848	18	2.6	18	96	0	83	43	2	21	32	1.65
78569--78654	19	4.4	20	84	7	106	50	23	15	11	1.76
79040--79082	22	2.0	22	100	0	86	18	13	41	25	1.88
79258--79311	20	2.7	20	85	0	81	27	22	24	25	2.00
79328--79373	21	2.2	21	88	0	65	39	19	23	17	1.92

Tables:   1

The End!