genome.fa.s4050.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004050.1 Hibiscus syriacus cultivar Beakdansim tig00008849_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73161

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4508--4615	36	3.0	36	94	4	184	40	29	22	7	1.81
4631--4667	18	2.1	18	89	0	56	64	27	5	2	1.28
4814--4934	38	3.2	38	94	3	199	23	30	19	26	1.98
12397--12452	20	2.8	20	86	5	69	32	17	23	26	1.97
12801--12843	18	2.4	16	79	20	50	27	0	9	62	1.25
14253--14310	18	3.2	18	95	0	98	36	0	51	12	1.39
14253--14318	18	3.7	18	93	0	96	37	0	51	10	1.37
14329--14377	21	2.6	18	76	17	53	51	12	30	6	1.64
29655--29695	15	2.9	15	82	10	52	63	0	0	36	0.95
30556--30598	15	2.9	15	82	6	52	0	23	2	74	0.93
30667--30700	10	3.4	10	84	15	52	0	20	0	79	0.73
31145--31247	3	35.3	3	88	9	160	64	0	0	34	1.01
31145--31247	50	2.1	49	92	5	172	64	0	0	34	1.01
31566--32326	111	6.9	112	93	5	1225	29	18	13	38	1.89
31566--32312	221	3.4	223	92	5	1227	28	18	13	38	1.89
33056--33538	83	5.8	83	88	2	707	35	21	13	28	1.92
33058--33538	168	2.9	167	90	2	716	35	21	13	28	1.92
33056--33538	251	1.9	251	96	0	887	35	21	13	28	1.92
46040--46086	15	3.3	15	80	14	55	59	0	2	38	1.09
46130--46171	15	2.7	16	78	14	52	71	4	2	21	1.16
46977--47018	15	2.8	15	82	7	50	0	23	2	73	0.94
47088--47128	11	3.6	12	80	9	50	0	19	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47091--47129	12	3.3	12	82	7	53	0	17	0	82	0.68
47579--47702	3	41.3	3	93	0	212	62	0	3	33	1.11
49019--49074	24	2.4	23	90	3	85	62	17	8	10	1.52
49019--49110	24	3.9	23	80	5	78	59	17	9	13	1.59
49283--49338	24	2.3	24	93	0	94	62	16	7	14	1.52
49286--49338	14	4.1	14	74	18	51	62	15	7	15	1.53
53467--53506	21	1.9	21	85	10	55	35	10	2	52	1.48
57186--57257	20	3.6	20	76	0	90	36	19	22	22	1.95
57182--57277	40	2.4	40	89	0	147	34	20	20	23	1.97
57183--57299	20	5.8	20	73	7	85	31	21	20	26	1.98
57474--57516	22	2.0	22	95	0	77	27	41	11	18	1.85
57899--57992	20	4.8	20	84	1	100	14	17	23	44	1.85
57958--58001	20	2.2	20	87	0	61	11	11	20	56	1.64
59911--59977	20	3.3	20	89	0	98	32	25	17	23	1.97
60021--60096	20	3.8	20	96	0	143	15	18	25	40	1.90
60004--60090	40	2.4	37	84	11	108	14	20	24	40	1.90
62544--62592	19	2.7	17	84	9	53	26	18	30	24	1.98
62671--62707	19	1.9	19	100	0	74	29	16	32	21	1.95
62546--62753	65	3.2	63	78	8	206	27	16	24	31	1.96
62735--62774	21	1.9	21	94	0	71	22	15	30	32	1.94
62735--62781	21	2.2	21	88	0	67	21	14	27	36	1.93
65321--65400	24	3.5	23	77	14	94	27	23	26	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65298--65420	44	2.8	42	75	12	122	24	21	28	26	1.99
69005--69051	24	2.0	24	82	0	58	29	19	4	46	1.68
69139--69176	15	2.5	15	100	0	76	23	10	13	52	1.71
71032--71211	63	2.9	65	80	13	200	28	15	25	30	1.96
71217--71256	21	1.9	21	94	0	71	22	15	30	32	1.94

Tables:   1

The End!