Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004051.1 Hibiscus syriacus cultivar Beakdansim tig00008853_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64749

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4321--4534
74
2.9
73
83
12
260
57
11
1
28
1.45
4321--4509
74
2.6
74
88
8
262
57
13
1
28
1.43
5301--5329
2
14.5
2
100
0
58
48
0
0
51
1.00
6326--6366
15
2.9
15
82
10
50
7
26
0
65
1.18
9270--9297
4
7.0
4
100
0
56
25
0
0
75
0.81
9801--10070
133
2.1
132
85
3
366
25
10
14
49
1.75
11118--11175
22
2.6
22
88
0
89
27
15
24
32
1.95
14038--14078
15
2.9
15
82
10
50
7
31
0
60
1.24
14538--14577
21
2.0
20
95
5
71
40
10
20
30
1.85
16892--17165
133
2.1
134
86
0
379
25
8
14
50
1.71
18235--18292
22
2.6
22
88
0
80
25
17
20
36
1.94
20866--20908
19
2.3
19
91
0
68
25
20
4
48
1.69
25056--25085
13
2.3
13
94
0
51
10
23
0
66
1.21
25619--25670
21
2.5
21
90
0
86
32
19
26
21
1.97
25658--25709
18
2.6
21
82
11
65
26
17
26
28
1.97
28823--28916
39
2.4
39
87
0
134
39
9
6
44
1.63
28945--29023
38
2.1
38
86
9
108
45
8
5
40
1.57
28849--29108
96
2.7
96
83
3
342
43
10
7
39
1.67
29039--29192
39
3.9
39
80
8
170
46
12
7
33
1.70
29244--29542
58
5.2
57
76
11
243
40
12
9
37
1.76
29453--29624
91
1.9
91
86
4
249
39
15
8
37
1.77
29786--30013
45
5.1
45
75
6
210
37
16
10
35
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29786--30013
90
2.5
89
77
8
246
37
16
10
35
1.83
30252--30281
12
2.5
12
94
0
51
50
6
6
36
1.55
31852--31898
23
2.0
23
100
0
94
25
17
8
48
1.74
35309--35360
13
4.0
13
87
0
77
32
17
23
26
1.96
35178--35333
85
1.8
85
81
2
197
28
19
20
32
1.97
38916--38944
3
9.7
3
100
0
58
65
0
0
34
0.93
40198--40431
45
5.2
45
90
0
326
40
14
22
23
1.90
44266--44480
55
3.9
55
84
3
263
33
16
17
32
1.92
55824--55897
2
37.0
2
100
0
148
50
0
0
50
1.00
57926--57970
17
2.6
17
100
0
90
13
31
15
40
1.86
58552--58603
2
26.0
2
100
0
104
50
0
0
50
1.00
59313--59362
21
2.4
21
86
6
66
36
6
0
58
1.23

Tables:   1

The End!