genome.fa.s4053.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004053.1 Hibiscus syriacus cultivar Beakdansim tig00008865_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100158

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3521--3611	45	2.0	46	91	2	148	27	19	25	27	1.99
3631--3668	20	1.9	20	94	0	67	18	15	34	31	1.92
10253--10292	21	1.9	21	85	10	55	35	10	2	52	1.48
12277--12367	45	2.0	46	91	6	150	26	19	27	26	1.99
19016--19050	2	17.5	2	93	0	61	51	2	0	45	1.16
23219--23279	23	2.7	23	94	0	104	27	27	24	19	1.99
23295--23615	103	3.1	103	97	0	597	36	23	13	26	1.92
29211--29255	21	2.1	21	83	0	54	15	26	28	28	1.96
35090--35162	34	2.1	34	87	0	101	45	23	0	31	1.53
36195--36236	16	2.5	17	71	21	52	26	30	7	35	1.83
36458--36502	20	2.2	20	96	0	81	26	26	11	35	1.90
36700--36764	20	3.2	20	97	0	121	24	29	9	36	1.86
40475--40539	21	3.3	20	76	18	66	27	0	0	72	0.85
40477--40539	29	2.2	29	83	11	76	26	0	0	73	0.84
40475--40534	16	3.6	16	74	14	59	28	0	0	71	0.86
40787--40846	27	2.2	27	79	5	68	71	1	0	26	0.95
40787--40833	20	2.3	21	79	13	55	74	0	0	25	0.82
40800--40837	15	2.5	15	95	4	67	71	0	0	28	0.87
41291--41316	11	2.4	11	100	0	52	7	0	57	34	1.27
43741--43771	2	15.5	2	100	0	62	48	0	0	51	1.00
55550--55592	20	2.2	20	91	0	68	34	20	11	32	1.89
55854--56458	302	2.0	303	95	0	1077	29	22	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57096--57132	12	3.1	12	84	0	56	32	18	13	35	1.90
57520--57734	45	4.8	44	87	4	261	31	20	6	41	1.78
64060--64488	85	5.0	85	86	1	554	35	20	18	26	1.95
64056--64545	170	2.9	169	79	5	538	35	20	17	26	1.95
65262--65307	24	1.9	24	81	0	56	30	0	0	69	0.89
65333--65420	36	2.4	36	84	3	122	43	6	9	40	1.63
65406--65436	2	15.5	2	100	0	62	51	0	0	48	1.00
65330--65514	91	2.1	86	85	6	244	44	4	7	43	1.52
65503--65688	32	5.4	33	73	18	137	46	3	5	44	1.44
65644--65723	39	2.0	39	88	7	117	43	1	3	51	1.27
66931--67024	36	2.6	36	74	15	88	21	6	2	70	1.20
67429--67692	138	1.9	138	88	1	404	36	9	12	42	1.75
67562--67636	29	2.6	29	89	2	105	33	5	14	46	1.67
67895--67933	16	2.4	17	86	4	53	51	0	2	46	1.14
67903--67940	17	2.3	16	95	4	67	44	0	5	50	1.24
69735--69809	35	2.1	35	87	4	107	33	1	21	44	1.61
75953--76002	25	2.0	25	92	0	82	24	20	12	44	1.85
78459--78507	18	2.6	18	87	6	62	63	10	0	26	1.26
78924--78994	21	3.3	21	76	3	88	19	22	33	23	1.97
78989--79075	42	2.1	41	82	6	104	18	21	34	25	1.96
80278--80805	59	9.0	59	91	1	819	30	21	9	38	1.85
80278--80812	235	2.3	236	91	3	871	31	20	9	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81162--81209	19	2.6	19	83	3	53	22	20	18	37	1.94
81215--81288	22	3.7	19	72	20	62	27	27	14	31	1.95
81122--81362	95	2.5	95	82	4	256	26	24	15	34	1.95
85791--86737	59	16.1	59	89	2	1375	31	20	10	37	1.86
87049--87250	95	2.1	95	83	1	244	27	21	16	34	1.95
89024--90225	54	22.3	54	87	3	1582	27	17	20	35	1.95
89173--89254	27	3.0	27	65	19	71	26	14	19	39	1.90
91263--91306	20	2.1	21	83	4	54	43	29	2	25	1.67
96222--96670	54	8.3	54	91	0	684	25	16	22	35	1.95
99362--99410	20	2.4	20	86	3	71	63	0	0	36	0.95
99429--99476	20	2.4	18	78	18	51	58	6	4	31	1.42

Tables:   1

The End!