Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004054.1 Hibiscus syriacus cultivar Beakdansim tig00008867_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 94663
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Found at i:925 original size:18 final size:18
Alignment explanation
Indices: 902--952 Score: 93
Period size: 18 Copynumber: 2.8 Consensus size: 18
892 ATTACTCGTA
*
902 ATTTCACTTAGATTAACT
1 ATTTCACTTAGATTAACC
920 ATTTCACTTAGATTAACC
1 ATTTCACTTAGATTAACC
938 ATTTCACTTAGATTA
1 ATTTCACTTAGATTA
953 CTTAGTAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.33, C:0.18, G:0.06, T:0.43
Consensus pattern (18 bp):
ATTTCACTTAGATTAACC
Found at i:1125 original size:20 final size:20
Alignment explanation
Indices: 1098--1165 Score: 91
Period size: 20 Copynumber: 3.4 Consensus size: 20
1088 TAGTTTACTT
*
1098 TCGCAACGTGAAAATGACTA
1 TCGCAACGCGAAAATGACTA
*
1118 TTGCAACGCGAAAATGACTA
1 TCGCAACGCGAAAATGACTA
* **
1138 TCGCAACACGAATTTGACTA
1 TCGCAACGCGAAAATGACTA
1158 TCGCAACG
1 TCGCAACG
1166 AAAGAATCGC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.21
Consensus pattern (20 bp):
TCGCAACGCGAAAATGACTA
Found at i:1194 original size:19 final size:19
Alignment explanation
Indices: 1170--1220 Score: 75
Period size: 19 Copynumber: 2.7 Consensus size: 19
1160 GCAACGAAAG
*
1170 AATCGCAATGCGAAATGAA
1 AATCGCAATACGAAATGAA
*
1189 AATCGCATTACGAAATGAA
1 AATCGCAATACGAAATGAA
*
1208 AATCGCATTACGA
1 AATCGCAATACGA
1221 TTCTCTCATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.45, C:0.18, G:0.18, T:0.20
Consensus pattern (19 bp):
AATCGCAATACGAAATGAA
Found at i:1258 original size:20 final size:20
Alignment explanation
Indices: 1229--1293 Score: 80
Period size: 20 Copynumber: 3.4 Consensus size: 20
1219 GATTCTCTCA
1229 TTGCGATAGTCAAATTCGCG
1 TTGCGATAGTCAAATTCGCG
* **
1249 TTGTGATAGTCATTTTCGCG
1 TTGCGATAGTCAAATTCGCG
*
1269 TTGCGATAGTC--ATTCGTG
1 TTGCGATAGTCAAATTCGCG
1287 TTGCGAT
1 TTGCGAT
1294 TTTAAGTTTC
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
18 12 0.31
20 27 0.69
ACGTcount: A:0.18, C:0.17, G:0.26, T:0.38
Consensus pattern (20 bp):
TTGCGATAGTCAAATTCGCG
Found at i:1817 original size:18 final size:20
Alignment explanation
Indices: 1779--1820 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
1769 CTCACCTGTC
1779 ATCGTTCAAGAGGCCTCCCCT
1 ATCGTTCAAGAGG-CTCCCCT
1800 ATCGTTCAAGA-G-TCCCCT
1 ATCGTTCAAGAGGCTCCCCT
1818 ATC
1 ATC
1821 ATCCCTCAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 9 0.43
20 1 0.05
21 11 0.52
ACGTcount: A:0.21, C:0.36, G:0.17, T:0.26
Consensus pattern (20 bp):
ATCGTTCAAGAGGCTCCCCT
Found at i:1850 original size:21 final size:22
Alignment explanation
Indices: 1802--1879 Score: 72
Period size: 21 Copynumber: 3.6 Consensus size: 22
1792 CCTCCCCTAT
1802 CGTTCAAGAGTCCCCTATCATC
1 CGTTCAAGAGTCCCCTATCATC
* *
1824 C-CTCAAGAGTCCCCTCTCA-C
1 CGTTCAAGAGTCCCCTATCATC
* * *
1844 CGTTCAAGAGGCCACTGTCAT-
1 CGTTCAAGAGTCCCCTATCATC
*
1865 CGTTGAAGAGGTCCC
1 CGTTCAAGA-GTCCC
1880 TCCCAACATT
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
20 2 0.05
21 38 0.86
22 4 0.09
ACGTcount: A:0.22, C:0.36, G:0.19, T:0.23
Consensus pattern (22 bp):
CGTTCAAGAGTCCCCTATCATC
Found at i:1874 original size:42 final size:41
Alignment explanation
Indices: 1774--1879 Score: 104
Period size: 42 Copynumber: 2.5 Consensus size: 41
1764 CCCGACTCAC
* * * *
1774 CTGTCATCGTTCAAGAGGCCTCCCCTATCGTTCAAGAGTCCC
1 CTGTCATCGTTCAAGAGTCC-CCCCTACCGTTCAAGAGGCCA
* ** *
1816 CTATCATCCCTCAAGAGTCCCCTCTCACCGTTCAAGAGGCCA
1 CTGTCATCGTTCAAGAGTCCCCCCT-ACCGTTCAAGAGGCCA
*
1858 CTGTCATCGTTGAAGAGGTCCC
1 CTGTCATCGTTCAAGA-GTCCC
1880 TCCCAACATT
Statistics
Matches: 50, Mismatches: 12, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
41 4 0.08
42 41 0.82
43 5 0.10
ACGTcount: A:0.21, C:0.36, G:0.19, T:0.25
Consensus pattern (41 bp):
CTGTCATCGTTCAAGAGTCCCCCCTACCGTTCAAGAGGCCA
Found at i:3301 original size:14 final size:14
Alignment explanation
Indices: 3282--3320 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
3272 TTGCTTGTTT
3282 AATTGATTTATAAA
1 AATTGATTTATAAA
*
3296 AATTGATTTGTAAA
1 AATTGATTTATAAA
*
3310 AGTTGATTTAT
1 AATTGATTTAT
3321 TTAATATTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.13, T:0.46
Consensus pattern (14 bp):
AATTGATTTATAAA
Found at i:3319 original size:28 final size:29
Alignment explanation
Indices: 3284--3338 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
3274 GCTTGTTTAA
*
3284 TTGATTTA-TAAAAATTGATTTGTAAAAG
1 TTGATTTATTAAAAATTGATGTGTAAAAG
* *
3312 TTGATTTATTTAATATTGATGTGTAAA
1 TTGATTTATTAAAAATTGATGTGTAAA
3339 TAATTCTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 8 0.35
29 15 0.65
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.47
Consensus pattern (29 bp):
TTGATTTATTAAAAATTGATGTGTAAAAG
Found at i:3548 original size:34 final size:34
Alignment explanation
Indices: 3505--3641 Score: 148
Period size: 34 Copynumber: 3.9 Consensus size: 34
3495 AGTCAATTCG
* *
3505 CGTTGCGATAGTCTAATACGCTTTGCGATTTTCT
1 CGTTGCGATAGTCAAATACGCATTGCGATTTTCT
* *
3539 CGTTGCGATAGTCAAATTCGCGTTGCGATTTTCT
1 CGTTGCGATAGTCAAATACGCATTGCGATTTTCT
* * *
3573 CGTTGTGATAGTCAAATACCCATTGCGATAATCAAATTCG
1 CGTTGCGATAGTCAAATACGCATTGCGAT--T----TTCT
*
3613 CGTTGCGATAGTCAAATTCGCATTGCGAT
1 CGTTGCGATAGTCAAATACGCATTGCGAT
3642 AGACAAATTC
Statistics
Matches: 86, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
34 56 0.65
36 1 0.01
40 29 0.34
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.35
Consensus pattern (34 bp):
CGTTGCGATAGTCAAATACGCATTGCGATTTTCT
Found at i:3564 original size:20 final size:20
Alignment explanation
Indices: 3495--3777 Score: 211
Period size: 20 Copynumber: 15.4 Consensus size: 20
3485 GCAACGCGGA
3495 AGTC-AATTCGCGTTGCGAT
1 AGTCAAATTCGCGTTGCGAT
* * *
3514 AGTCTAATACGCTTTGCGAT
1 AGTCAAATTCGCGTTGCGAT
*
3534 --T----TTCTCGTTGCGAT
1 AGTCAAATTCGCGTTGCGAT
3548 AGTCAAATTCGCGTTGCGAT
1 AGTCAAATTCGCGTTGCGAT
* *
3568 --T----TTCTCGTTGTGAT
1 AGTCAAATTCGCGTTGCGAT
* * *
3582 AGTCAAATACCCATTGCGAT
1 AGTCAAATTCGCGTTGCGAT
*
3602 AATCAAATTCGCGTTGCGAT
1 AGTCAAATTCGCGTTGCGAT
*
3622 AGTCAAATTCGCATTGCGAT
1 AGTCAAATTCGCGTTGCGAT
*
3642 AGACAAATTCGCGTTGCGAT
1 AGTCAAATTCGCGTTGCGAT
*
3662 --T----TTTGCGTTGCGAT
1 AGTCAAATTCGCGTTGCGAT
* *
3676 AGTCATATTCGTGTTGCGAT
1 AGTCAAATTCGCGTTGCGAT
3696 AGTCAAATTCGCGTTGC-A-
1 AGTCAAATTCGCGTTGCGAT
* * *
3714 A-T---TTTTGAGTTGCGAT
1 AGTCAAATTCGCGTTGCGAT
*
3730 AATCAAATTCGCGTTGCGAT
1 AGTCAAATTCGCGTTGCGAT
3750 AGTCAAATTCGCGTTGCGAT
1 AGTCAAATTCGCGTTGCGAT
*
3770 ATTCAAAT
1 AGTCAAAT
3778 GAATGTGTAA
Statistics
Matches: 205, Mismatches: 34, Indels: 49
0.71 0.12 0.17
Matches are distributed among these distances:
14 41 0.20
15 1 0.00
16 4 0.02
17 2 0.01
18 3 0.01
19 5 0.02
20 149 0.73
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (20 bp):
AGTCAAATTCGCGTTGCGAT
Found at i:3650 original size:94 final size:94
Alignment explanation
Indices: 3541--3712 Score: 256
Period size: 94 Copynumber: 1.8 Consensus size: 94
3531 GATTTTCTCG
* *
3541 TTGCGATAGTCAAATTCGCGTTGCGATTTTCT-CGTTGTGATAGTCAAATACCCATTGCGATAAT
1 TTGCGATAGACAAATTCGCGTTGCGATTTT-TGCGTTGCGATAGTCAAATACCCATTGCGATAAT
3605 CAAATTCGCGTTGCGATAGTCAAATTCGCA
65 CAAATTCGCGTTGCGATAGTCAAATTCGCA
* * *** *
3635 TTGCGATAGACAAATTCGCGTTGCGATTTTTGCGTTGCGATAGTCATATTCGTGTTGCGATAGTC
1 TTGCGATAGACAAATTCGCGTTGCGATTTTTGCGTTGCGATAGTCAAATACCCATTGCGATAATC
3700 AAATTCGCGTTGC
66 AAATTCGCGTTGC
3713 AATTTTTGAG
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
93 1 0.01
94 68 0.99
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (94 bp):
TTGCGATAGACAAATTCGCGTTGCGATTTTTGCGTTGCGATAGTCAAATACCCATTGCGATAATC
AAATTCGCGTTGCGATAGTCAAATTCGCA
Found at i:3670 original size:54 final size:54
Alignment explanation
Indices: 3612--3769 Score: 253
Period size: 54 Copynumber: 2.9 Consensus size: 54
3602 AATCAAATTC
* *
3612 GCGTTGCGATAGTCAAATTCGCATTGCGATAGACAAATTCGCGTTGCGATTTTT
1 GCGTTGCGATAGTCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGATTTTT
* * *
3666 GCGTTGCGATAGTCATATTCGTGTTGCGATAGTCAAATTCGCGTTGCAATTTTT
1 GCGTTGCGATAGTCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGATTTTT
* *
3720 GAGTTGCGATAATCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGAT
1 GCGTTGCGATAGTCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGAT
3770 ATTCAAATGA
Statistics
Matches: 94, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 94 1.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (54 bp):
GCGTTGCGATAGTCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGATTTTT
Found at i:3686 original size:128 final size:128
Alignment explanation
Indices: 3495--3770 Score: 326
Period size: 128 Copynumber: 2.2 Consensus size: 128
3485 GCAACGCGGA
* * *
3495 AGTC-AATTCGCGTTGCGATAGTCTAATACGCTTTGCGATTTTCTCGTTGCGATAGTCAAATTCG
1 AGTCAAATTCGCGTTGCGATAGACAAATACGCGTTGCGATTTTCTCGTTGCGATAGTCAAATTCG
** *** *
3559 CGTTGCGATTTTCTCGTT-GTGATAGTCAAATACCCA-TTGCGATAATCAAATTCGCGTTGCGAT
66 CGTTGCGATAGTCAAATTCGCG-TAG-CAAATACCCAGTTGCGATAATCAAATTCGCGTTGCGAT
* * *
3622 AGTCAAATTCGCATTGCGATAGACAAATTCGCGTTGCGATTTT-TGCGTTGCGATAGTCATATTC
1 AGTCAAATTCGCGTTGCGATAGACAAATACGCGTTGCGATTTTCT-CGTTGCGATAGTCAAATTC
* * * ****
3686 GTGTTGCGATAGTCAAATTCGCGTTGCAATTTTTGAGTTGCGATAATCAAATTCGCGTTGCGAT
65 GCGTTGCGATAGTCAAATTCGCGTAGCAAATACCCAGTTGCGATAATCAAATTCGCGTTGCGAT
3750 AGTCAAATTCGCGTTGCGATA
1 AGTCAAATTCGCGTTGCGATA
3771 TTCAAATGAA
Statistics
Matches: 125, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
127 10 0.08
128 113 0.90
129 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (128 bp):
AGTCAAATTCGCGTTGCGATAGACAAATACGCGTTGCGATTTTCTCGTTGCGATAGTCAAATTCG
CGTTGCGATAGTCAAATTCGCGTAGCAAATACCCAGTTGCGATAATCAAATTCGCGTTGCGAT
Found at i:3952 original size:12 final size:12
Alignment explanation
Indices: 3937--3979 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
3927 AAGCCGGTTG
*
3937 TGATTGGGATTT
1 TGATTGCGATTT
**
3949 TGATTTTGATTT
1 TGATTGCGATTT
3961 TGATTGCGATTT
1 TGATTGCGATTT
3973 TGATTGC
1 TGATTGC
3980 CTTTTTCTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.16, C:0.05, G:0.26, T:0.53
Consensus pattern (12 bp):
TGATTGCGATTT
Found at i:3953 original size:6 final size:6
Alignment explanation
Indices: 3944--3977 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
3934 TTGTGATTGG
**
3944 GATTTT GATTTT GATTTT GATTGC GATTTT GATT
1 GATTTT GATTTT GATTTT GATTTT GATTTT GATT
3978 GCCTTTTTCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.18, C:0.03, G:0.21, T:0.59
Consensus pattern (6 bp):
GATTTT
Found at i:6033 original size:14 final size:14
Alignment explanation
Indices: 6014--6050 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
6004 TCCTATGGCA
6014 TTTTCTTCGGGGAC
1 TTTTCTTCGGGGAC
*
6028 TTTTCTTCGGGGAT
1 TTTTCTTCGGGGAC
6042 TTCTTCTTC
1 TT-TTCTTC
6051 TTCTTTTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.05, C:0.22, G:0.22, T:0.51
Consensus pattern (14 bp):
TTTTCTTCGGGGAC
Found at i:6274 original size:24 final size:24
Alignment explanation
Indices: 6240--6293 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
6230 CTGAAACATC
*
6240 ATCAAAATCCGAGTATTTACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
6264 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
6288 ATCAAA
1 ATCAAA
6294 TTTCGAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:7129 original size:20 final size:20
Alignment explanation
Indices: 7103--7190 Score: 122
Period size: 20 Copynumber: 4.4 Consensus size: 20
7093 GAAATTCAGT
*
7103 ATTGCGACAGTCAGAATCGC
1 ATTGCGATAGTCAGAATCGC
* *
7123 GTTGCGATAGTTAGAATCGC
1 ATTGCGATAGTCAGAATCGC
* *
7143 GTTGCGATAGTTAGAATCGC
1 ATTGCGATAGTCAGAATCGC
*
7163 ATTGCGATAGTCATAATCGC
1 ATTGCGATAGTCAGAATCGC
7183 ATTGCGAT
1 ATTGCGAT
7191 TTACATATTC
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 62 1.00
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.28
Consensus pattern (20 bp):
ATTGCGATAGTCAGAATCGC
Found at i:7197 original size:20 final size:20
Alignment explanation
Indices: 7157--7230 Score: 96
Period size: 20 Copynumber: 3.7 Consensus size: 20
7147 CGATAGTTAG
*
7157 AATCGCATTGCGATAGT-CAT
1 AATCGCATTGCGAT-TTACAT
7177 AATCGCATTGCGATTTACAT
1 AATCGCATTGCGATTTACAT
* *
7197 ATTCGCATTGCAATTTACAT
1 AATCGCATTGCGATTTACAT
*
7217 ATTCGCATTGCGAT
1 AATCGCATTGCGAT
7231 AGTCGGAAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
19 1 0.02
20 48 0.98
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.35
Consensus pattern (20 bp):
AATCGCATTGCGATTTACAT
Found at i:7203 original size:40 final size:39
Alignment explanation
Indices: 7117--7231 Score: 108
Period size: 40 Copynumber: 2.9 Consensus size: 39
7107 CGACAGTCAG
* * * * *
7117 AATCGCGTTGCGATAGTTAGAATCGCGTTGCGATAGTTAG
1 AATCGCATTGCGATAGTCATAATCGCATTGCGATA-TTAC
7157 AATCGCATTGCGATAGTCATAATCGCATTGCGAT-TTAC
1 AATCGCATTGCGATAGTCATAATCGCATTGCGATATTAC
* * *
7195 ATATTCGCATTGCAAT-TTACATATTCGCATTGCGATA
1 A-A-TCGCATTGCGATAGT-CATAATCGCATTGCGATA
7232 GTCGGAAAAT
Statistics
Matches: 63, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
38 4 0.06
39 2 0.03
40 57 0.90
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (39 bp):
AATCGCATTGCGATAGTCATAATCGCATTGCGATATTAC
Found at i:7344 original size:19 final size:19
Alignment explanation
Indices: 7320--7356 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7310 CGATACCGGA
*
7320 GATCGCGTTGCGAATTATC
1 GATCGCATTGCGAATTATC
*
7339 GATCGCATTGCGATTTAT
1 GATCGCATTGCGAATTAT
7357 TTGGTCATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (19 bp):
GATCGCATTGCGAATTATC
Found at i:15347 original size:16 final size:17
Alignment explanation
Indices: 15315--15348 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
15305 AGAATAAAAT
*
15315 AATATTATACTATTAAA
1 AATATTATACAATTAAA
15332 AATATT-TACAATTAAA
1 AATATTATACAATTAAA
15348 A
1 A
15349 TTAAAAAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (17 bp):
AATATTATACAATTAAA
Found at i:15715 original size:19 final size:19
Alignment explanation
Indices: 15691--15732 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
15681 AGAAAAACGA
*
15691 TTTTAGCCTAAAATGTTAT
1 TTTTAGCCTAAAATATTAT
15710 TTTTAGCCTAAAATATTAT
1 TTTTAGCCTAAAATATTAT
15729 TTTT
1 TTTT
15733 GGTGTTTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.31, C:0.10, G:0.07, T:0.52
Consensus pattern (19 bp):
TTTTAGCCTAAAATATTAT
Found at i:17432 original size:21 final size:21
Alignment explanation
Indices: 17408--17456 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
17398 ACCGAAGTGT
17408 CACATAATTGT-CTCGAAGGAC
1 CACATAATTGTCCT-GAAGGAC
*
17429 CACATCATTTGTCCTGAAGGAC
1 CACAT-AATTGTCCTGAAGGAC
17451 CACATA
1 CACATA
17457 GAACCCTCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 6 0.24
22 17 0.68
23 2 0.08
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (21 bp):
CACATAATTGTCCTGAAGGAC
Found at i:17669 original size:14 final size:14
Alignment explanation
Indices: 17652--17709 Score: 75
Period size: 14 Copynumber: 4.2 Consensus size: 14
17642 ACATCAAAAC
17652 ATAGCTTAAATAAT
1 ATAGCTTAAATAAT
17666 ATAGCTTAAATAAT
1 ATAGCTTAAATAAT
* *
17680 ATAACTTAAATAAA
1 ATAGCTTAAATAAT
17694 ATA-CTATAAA-AAT
1 ATAGCT-TAAATAAT
17707 ATA
1 ATA
17710 AACTAAAAGA
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
13 7 0.17
14 33 0.82
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.33
Consensus pattern (14 bp):
ATAGCTTAAATAAT
Found at i:22603 original size:18 final size:20
Alignment explanation
Indices: 22550--22627 Score: 88
Period size: 20 Copynumber: 3.9 Consensus size: 20
22540 CACTGAATAT
22550 TTGTCCCGAAGGACCACTGA
1 TTGTCCCGAAGGACCACTGA
** *
22570 TTGTTTCGAAGAACCACT-A
1 TTGTCCCGAAGGACCACTGA
22589 -TGTCCCGAAGGACCACTGTA
1 TTGTCCCGAAGGACCACTG-A
*
22609 TATGTCACGAAGGACCACT
1 T-TGTCCCGAAGGACCACT
22628 CCTTAAGAAC
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
18 14 0.30
19 1 0.02
20 16 0.34
22 16 0.34
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (20 bp):
TTGTCCCGAAGGACCACTGA
Found at i:22881 original size:24 final size:23
Alignment explanation
Indices: 22824--22882 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 23
22814 CATATCTTCT
22824 TATCACTTTTCATATAAACATGTG
1 TATCAC-TTTCATATAAACATGTG
*
22848 TTTCAC-TTCATATACACACATGTG
1 TATCACTTTCATATA-A-ACATGTG
22872 -ATCACTTTCAT
1 TATCACTTTCAT
22883 TATTTCACAT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
22 8 0.27
23 5 0.17
24 17 0.57
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.41
Consensus pattern (23 bp):
TATCACTTTCATATAAACATGTG
Found at i:23399 original size:19 final size:19
Alignment explanation
Indices: 23367--23437 Score: 106
Period size: 19 Copynumber: 3.7 Consensus size: 19
23357 TTTAAGTAGG
*
23367 TGCATTGATGCACTCCTCA
1 TGCATCGATGCACTCCTCA
* *
23386 TGCATCGATACACTCCTTA
1 TGCATCGATGCACTCCTCA
*
23405 TGCATCGATGCGCTCCTCA
1 TGCATCGATGCACTCCTCA
23424 TGCATCGATGCACT
1 TGCATCGATGCACT
23438 AATTGCATTC
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 45 1.00
ACGTcount: A:0.21, C:0.32, G:0.17, T:0.30
Consensus pattern (19 bp):
TGCATCGATGCACTCCTCA
Found at i:29550 original size:20 final size:18
Alignment explanation
Indices: 29503--29575 Score: 101
Period size: 18 Copynumber: 3.9 Consensus size: 18
29493 ACTGAATATT
*
29503 TGTCCCAAAGGACCACTA
1 TGTCCCGAAGGACCACTA
29521 TGTCCCGAAGGACCACTGA
1 TGTCCCGAAGGACCACT-A
* *
29540 TTGTTCCGAAGAACCACTA
1 -TGTCCCGAAGGACCACTA
29559 TGTCCCGAAGGACCACT
1 TGTCCCGAAGGACCACT
29576 CTTTAAGAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
18 31 0.65
19 2 0.04
20 15 0.31
ACGTcount: A:0.29, C:0.32, G:0.21, T:0.19
Consensus pattern (18 bp):
TGTCCCGAAGGACCACTA
Found at i:33461 original size:22 final size:22
Alignment explanation
Indices: 33403--33518 Score: 101
Period size: 22 Copynumber: 5.2 Consensus size: 22
33393 CCACAACTCG
*
33403 CATAATTTG-CACCGAAGTACCA
1 CATAATTTGTC-CCGAAGGACCA
** *
33425 CATAA-TTGTTTCGAATGACCA
1 CATAATTTGTCCCGAAGGACCA
* *
33446 CATAATTTGTCGCGAAGGATCA
1 CATAATTTGTCCCGAAGGACCA
*
33468 CATAGGTTTTGTCCCGAAGGACCA
1 CATA--ATTTGTCCCGAAGGACCA
* * *
33492 CATATTTTGTCCCAAATGACCA
1 CATAATTTGTCCCGAAGGACCA
33514 CATAA
1 CATAA
33519 AATCCTCGAC
Statistics
Matches: 76, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
21 16 0.21
22 41 0.54
24 19 0.25
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (22 bp):
CATAATTTGTCCCGAAGGACCA
Found at i:44939 original size:30 final size:29
Alignment explanation
Indices: 44903--44961 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 29
44893 AGATGACATA
44903 ACATATATCACATCATTATTTT-AATTGATG
1 ACATATATCACATCATT-TTTTGAA-TGATG
*
44933 ACATATATCATATCATTTTTTGAATGATG
1 ACATATATCACATCATTTTTTGAATGATG
44962 TGACATATCA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 9 0.33
30 18 0.67
ACGTcount: A:0.36, C:0.12, G:0.08, T:0.44
Consensus pattern (29 bp):
ACATATATCACATCATTTTTTGAATGATG
Found at i:53768 original size:2 final size:2
Alignment explanation
Indices: 53761--53785 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
53751 TGAAGAAGCC
53761 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
53786 CGCACTTCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:58454 original size:2 final size:2
Alignment explanation
Indices: 58447--58473 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
58437 TATGATTTCT
58447 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
58474 CTTTTTGCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:59375 original size:101 final size:101
Alignment explanation
Indices: 59200--59401 Score: 395
Period size: 101 Copynumber: 2.0 Consensus size: 101
59190 TTATATTACT
*
59200 TTAGATTATGAGTTCTAGACTTACTATGAATTCTTTCTTTCTGAAAATCTTTTTTTTCTTTGTTT
1 TTAGATTATGAGTTCTAGACTTACTATGAATTCTTCCTTTCTGAAAATCTTTTTTTTCTTTGTTT
59265 AAGTAAAATTAAAATTAGATTTAGAATTAAAAAATG
66 AAGTAAAATTAAAATTAGATTTAGAATTAAAAAATG
59301 TTAGATTATGAGTTCTAGACTTACTATGAATTCTTCCTTTCTGAAAATCTTTTTTTTCTTTGTTT
1 TTAGATTATGAGTTCTAGACTTACTATGAATTCTTCCTTTCTGAAAATCTTTTTTTTCTTTGTTT
59366 AAGTAAAATTAAAATTAGATTTAGAATTAAAAAATG
66 AAGTAAAATTAAAATTAGATTTAGAATTAAAAAATG
59402 AGAAGGTGAA
Statistics
Matches: 100, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
101 100 1.00
ACGTcount: A:0.35, C:0.08, G:0.11, T:0.46
Consensus pattern (101 bp):
TTAGATTATGAGTTCTAGACTTACTATGAATTCTTCCTTTCTGAAAATCTTTTTTTTCTTTGTTT
AAGTAAAATTAAAATTAGATTTAGAATTAAAAAATG
Found at i:62555 original size:11 final size:11
Alignment explanation
Indices: 62539--62567 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
62529 ATATACACGT
62539 AGTTACAAACC
1 AGTTACAAACC
62550 AGTTACAAACC
1 AGTTACAAACC
62561 AGTTACA
1 AGTTACA
62568 TGATTCAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.45, C:0.24, G:0.10, T:0.21
Consensus pattern (11 bp):
AGTTACAAACC
Found at i:64667 original size:31 final size:29
Alignment explanation
Indices: 64625--64702 Score: 84
Period size: 31 Copynumber: 2.6 Consensus size: 29
64615 TTTTTCAATC
* **
64625 AAAATATATATTTAAAGTTTTATTTATAGTT
1 AAAATAGATATTTAAAGTAGTATTT-TA-TT
*
64656 AAAATAGATATTTAAAATAGTATTTTATT
1 AAAATAGATATTTAAAGTAGTATTTTATT
* *
64685 GAAATAGATACTTAAAGT
1 AAAATAGATATTTAAAGT
64703 CACTGTTCTA
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
29 17 0.43
30 2 0.05
31 21 0.52
ACGTcount: A:0.46, C:0.01, G:0.09, T:0.44
Consensus pattern (29 bp):
AAAATAGATATTTAAAGTAGTATTTTATT
Found at i:66212 original size:12 final size:12
Alignment explanation
Indices: 66195--66220 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
66185 TTAACTTTTT
66195 TAAAAATTTAGA
1 TAAAAATTTAGA
66207 TAAAAATTTAGA
1 TAAAAATTTAGA
66219 TA
1 TA
66221 CTTTAAAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.35
Consensus pattern (12 bp):
TAAAAATTTAGA
Found at i:70275 original size:31 final size:31
Alignment explanation
Indices: 70240--70311 Score: 108
Period size: 31 Copynumber: 2.3 Consensus size: 31
70230 TCAAATCACT
* * *
70240 AATTTGTTATAAATCGATAATATTAATGATC
1 AATTTGTTACAAATCGATAATATTAATAACC
70271 AATTTGTTACAAATCGATAATATTAATAACC
1 AATTTGTTACAAATCGATAATATTAATAACC
*
70302 AATTTATTAC
1 AATTTGTTAC
70312 TTTTTGAAAC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (31 bp):
AATTTGTTACAAATCGATAATATTAATAACC
Found at i:70736 original size:12 final size:12
Alignment explanation
Indices: 70719--70749 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
70709 CAGAGGAAAC
70719 GAAGAAATAAAA
1 GAAGAAATAAAA
70731 GAAGAAATAAAA
1 GAAGAAATAAAA
70743 GAAGAAA
1 GAAGAAA
70750 AGGAAGAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.74, C:0.00, G:0.19, T:0.06
Consensus pattern (12 bp):
GAAGAAATAAAA
Found at i:73563 original size:46 final size:46
Alignment explanation
Indices: 73496--73608 Score: 192
Period size: 46 Copynumber: 2.5 Consensus size: 46
73486 TGTATTATTG
73496 AGATAATACATATGTTATATAAATTGTTCAATTTTAGGCAAAAATA
1 AGATAATACATATGTTATATAAATTGTTCAATTTTAGGCAAAAATA
73542 AGATAATACATATGTTATATAAATTGTTCAATTTTAGGCAAAAATA
1 AGATAATACATATGTTATATAAATTGTTCAATTTTAGGCAAAAATA
* *
73588 ATATAATA-ATATATATATATA
1 AGATAATACATATGT-TATATA
73609 TATATATATA
Statistics
Matches: 64, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
45 5 0.08
46 59 0.92
ACGTcount: A:0.48, C:0.05, G:0.09, T:0.38
Consensus pattern (46 bp):
AGATAATACATATGTTATATAAATTGTTCAATTTTAGGCAAAAATA
Found at i:73603 original size:2 final size:2
Alignment explanation
Indices: 73588--73683 Score: 164
Period size: 2 Copynumber: 50.0 Consensus size: 2
73578 GGCAAAAATA
73588 AT AT A- AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
73628 AT AT AT AT -T AT AT AT AT -T AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
73668 AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
73684 GTAACACTCT
Statistics
Matches: 90, Mismatches: 0, Indels: 8
0.92 0.00 0.08
Matches are distributed among these distances:
1 4 0.04
2 86 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:77087 original size:24 final size:24
Alignment explanation
Indices: 77060--77105 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
77050 ATTTTCGATT
77060 TGGATTTTGATATGATACTTGACC
1 TGGATTTTGATATGATACTTGACC
77084 TGGATTTTGATATGATACTTGA
1 TGGATTTTGATATGATACTTGA
77106 TGTAACACCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.09, G:0.22, T:0.43
Consensus pattern (24 bp):
TGGATTTTGATATGATACTTGACC
Found at i:77851 original size:18 final size:18
Alignment explanation
Indices: 77828--77897 Score: 77
Period size: 18 Copynumber: 3.7 Consensus size: 18
77818 TTCAGTATTA
*
77828 GTCCCGTATGACCACTAT
1 GTCCCGTAGGACCACTAT
*
77846 GTCCCGAAGGACCACTATATAT
1 GTCCCGTAGGACCAC----TAT
77868 GTCCCGTAGGACCACTAT
1 GTCCCGTAGGACCACTAT
*
77886 GTCCCGAAGGAC
1 GTCCCGTAGGAC
77898 TACTCCTTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
18 27 0.61
22 17 0.39
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.21
Consensus pattern (18 bp):
GTCCCGTAGGACCACTAT
Found at i:77871 original size:22 final size:22
Alignment explanation
Indices: 77843--77885 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
77833 GTATGACCAC
77843 TATGTCCCGAAGGACCACTATA
1 TATGTCCCGAAGGACCACTATA
*
77865 TATGTCCCGTAGGACCACTAT
1 TATGTCCCGAAGGACCACTAT
77886 GTCCCGAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (22 bp):
TATGTCCCGAAGGACCACTATA
Found at i:79508 original size:45 final size:44
Alignment explanation
Indices: 79414--79516 Score: 136
Period size: 45 Copynumber: 2.3 Consensus size: 44
79404 GCACTACACC
* *
79414 ATGCATCGATGCATAAATCCTATTCGATGTTTGTATTTAATGGGG
1 ATGCATCGATGCATAAATCCTATTCGATGTTTCTATTTAAT-GGA
* *
79459 ATGCATCGATGCATAAATCCTATTCGATGTTTTCTTTTTAAAT-TA
1 ATGCATCGATGCATAAATCCTATTCGATG-TTTCTATTT-AATGGA
79504 ATGCATCGATGCA
1 ATGCATCGATGCA
79517 CTGTATGTGC
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
45 42 0.81
46 7 0.13
47 3 0.06
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (44 bp):
ATGCATCGATGCATAAATCCTATTCGATGTTTCTATTTAATGGA
Found at i:80337 original size:24 final size:24
Alignment explanation
Indices: 80305--80362 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
80295 CGGATGTTAC
*
80305 ACTTGACCTGGATTTTGATATGAT
1 ACTTGACCTGGATTCTGATATGAT
* *
80329 ACTTGACCTGGATTCTGATCTGCT
1 ACTTGACCTGGATTCTGATATGAT
80353 ACTTGACCTG
1 ACTTGACCTG
80363 AATTATGTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (24 bp):
ACTTGACCTGGATTCTGATATGAT
Found at i:81375 original size:2 final size:2
Alignment explanation
Indices: 81370--81396 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
81360 TTTTAATGAT
81370 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
81397 GAAATCAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:82622 original size:19 final size:20
Alignment explanation
Indices: 82597--82647 Score: 70
Period size: 18 Copynumber: 2.6 Consensus size: 20
82587 AAAAAAGTGT
*
82597 TTATTTTATTTTTAATATAA
1 TTATTTTATTTTTAATAAAA
82617 -TATTTTA-TTTTAATAAAA
1 TTATTTTATTTTTAATAAAA
82635 TTACTTTTATTTT
1 TTA-TTTTATTTT
82648 GTTATACGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 10 0.37
19 9 0.33
20 5 0.19
21 3 0.11
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (20 bp):
TTATTTTATTTTTAATAAAA
Found at i:90578 original size:18 final size:18
Alignment explanation
Indices: 90555--90591 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
90545 TTTATGATCA
*
90555 TATATAATATATATATTT
1 TATATAATATACATATTT
*
90573 TATATATTATACATATTT
1 TATATAATATACATATTT
90591 T
1 T
90592 TTTTCAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.57
Consensus pattern (18 bp):
TATATAATATACATATTT
Found at i:92074 original size:3 final size:3
Alignment explanation
Indices: 92066--92122 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
92056 AACCCTCCAC
92066 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
92114 ATA ATA ATA
1 ATA ATA ATA
92123 GCGTTGCCAT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:93366 original size:69 final size:71
Alignment explanation
Indices: 93292--93425 Score: 166
Period size: 72 Copynumber: 1.9 Consensus size: 71
93282 AGTCGTCATA
* *
93292 ATATTAAGTTTTCATGTGTTT-TTCCGACTAT-A-CACTTGGTCATTAACTAAAATAAAGCATGT
1 ATATTAAGTGTTCATGTGTTTCTT-CGACTATCAGCACTTGGTCATTAACCAAAATAAAGCATGT
93354 AGTGGTC
65 AGTGGTC
* * * * *
93361 ATATTAGGTGTTCATGTGTTTCTTCGATTGTGCAGTACTTGGTCATTAACCAAAATAGAGCATGT
1 ATATTAAGTGTTCATGTGTTTCTTCGACTAT-CAGCACTTGGTCATTAACCAAAATAAAGCATGT
93426 GTATTACGTA
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
69 24 0.44
70 2 0.04
71 1 0.02
72 27 0.50
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (71 bp):
ATATTAAGTGTTCATGTGTTTCTTCGACTATCAGCACTTGGTCATTAACCAAAATAAAGCATGTA
GTGGTC
Done.