genome.fa.s4055.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004055.1 Hibiscus syriacus cultivar Beakdansim tig00008872_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64367

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3059--3426	106	3.5	106	95	0	628	32	25	20	22	1.98
7767--7791	2	12.5	2	100	0	50	48	0	0	52	1.00
9616--9867	81	3.1	81	82	3	229	27	21	13	37	1.91
9652--9866	81	2.6	81	83	6	240	28	20	13	37	1.91
9808--9930	63	2.0	63	91	3	203	30	20	12	37	1.89
13985--14034	7	7.1	7	100	0	100	42	42	0	16	1.47
16798--16823	12	2.2	12	100	0	52	69	15	0	15	1.20
23347--23412	30	2.2	30	83	0	87	28	9	19	42	1.82
23368--23411	15	2.9	15	100	0	88	27	11	20	40	1.86
28852--28941	35	2.5	35	92	1	144	48	18	11	21	1.78
32784--32838	16	3.4	16	85	5	76	60	20	10	9	1.57
34399--34429	14	2.2	14	94	0	53	54	16	12	16	1.71
34379--34433	24	2.3	24	87	0	74	54	16	12	16	1.71
34394--34440	24	2.0	24	86	0	67	53	19	12	14	1.73
36647--36695	23	2.1	23	100	0	98	32	18	12	36	1.88
37223--37379	45	3.5	45	84	6	210	38	7	23	31	1.81
40320--40359	21	1.9	21	85	10	55	32	12	20	35	1.90
42659--42714	28	2.0	28	100	0	112	14	17	32	35	1.90
43239--43273	15	2.2	16	90	5	54	22	0	20	57	1.41
44812--44922	29	3.8	29	89	4	179	22	9	21	46	1.79
44812--44921	58	1.9	58	96	0	202	22	8	21	47	1.77
44812--44937	58	2.2	58	88	2	173	23	8	21	46	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45013--45042	10	3.0	10	100	0	60	10	30	30	30	1.90
45803--45827	13	1.9	13	100	0	50	32	0	20	48	1.50
47417--47467	19	2.7	19	85	8	70	25	15	35	23	1.94
47311--47469	65	2.5	65	86	3	205	27	16	25	30	1.97
47848--47927	31	2.6	31	91	0	124	31	35	2	31	1.71
53943--53982	21	1.9	21	85	10	55	35	10	2	52	1.48
56021--56071	19	2.7	19	79	8	61	25	13	35	25	1.93
55915--56073	65	2.5	65	85	3	196	27	15	25	30	1.96
61987--62016	13	2.3	13	100	0	60	16	46	23	13	1.82
62029--62184	29	5.4	29	85	1	179	25	8	19	47	1.77
62024--62184	87	1.9	87	85	2	225	24	8	19	47	1.77

Tables:   1

The End!