genome.fa.s4056.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004056.1 Hibiscus syriacus cultivar Beakdansim tig00008873_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62068

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22--89	30	2.4	28	85	5	91	8	5	55	29	1.54
99--435	30	11.3	30	72	6	211	18	7	52	21	1.70
91--233	59	2.4	59	84	4	173	20	6	51	20	1.70
157--388	59	3.9	59	78	4	191	17	8	52	21	1.71
161--431	89	3.1	86	82	5	267	17	8	52	21	1.71
108--430	149	2.2	150	85	5	424	18	8	52	21	1.71
227--430	59	3.4	59	79	5	171	17	8	52	21	1.71
411--518	42	2.6	43	80	7	132	13	12	52	20	1.73
619--676	31	1.9	30	89	3	89	12	5	60	22	1.51
619--682	30	2.1	30	85	5	85	12	4	60	21	1.50
782--884	30	3.5	29	86	5	136	14	4	59	21	1.54
2851--2897	24	2.0	24	82	0	58	4	4	61	29	1.34
2887--2929	15	2.9	15	78	0	50	11	4	58	25	1.52
2931--3013	30	2.8	30	90	0	130	9	6	56	27	1.55
3069--3151	30	2.8	30	90	0	121	26	6	49	18	1.70
3080--3167	30	2.9	30	87	0	104	28	4	48	18	1.67
3032--3400	60	6.4	60	77	8	271	23	5	49	21	1.71
3141--3190	18	2.8	18	84	0	64	28	4	48	20	1.67
3081--3244	78	2.1	78	87	0	229	25	5	49	19	1.70
3159--3371	30	7.1	30	91	1	293	21	6	49	22	1.72
3111--3214	48	2.2	48	94	0	181	26	3	50	19	1.65
3339--3442	48	2.2	48	85	3	138	23	6	48	22	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3312--3466	78	2.0	78	82	2	186	24	7	46	21	1.77
3445--3544	30	3.3	29	73	5	92	27	4	48	21	1.68
5267--5403	44	3.1	44	91	0	202	32	32	14	20	1.93
12479--12561	42	2.0	42	100	0	166	31	21	10	36	1.88
20676--20712	18	2.1	18	89	0	56	32	0	5	62	1.18
25325--25412	28	3.1	27	70	12	70	31	7	6	53	1.56
26289--26416	60	2.1	60	84	4	159	35	21	3	39	1.72
49408--49462	26	2.2	25	86	3	74	60	0	1	38	1.08
50330--50362	17	1.9	17	93	0	57	21	3	27	48	1.64
55510--55551	22	1.9	22	85	0	57	42	23	2	30	1.67
57442--57507	30	2.2	30	97	2	123	40	12	6	40	1.67
59895--59978	20	4.1	20	75	13	71	15	26	35	22	1.94

Tables:   1

The End!