genome.fa.s4057.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004057.1 Hibiscus syriacus cultivar Beakdansim tig00008874_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  170081

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3067--3170	31	3.4	29	76	7	100	39	6	17	36	1.76
12842--12899	29	2.0	29	100	0	116	37	34	10	17	1.84
15946--16007	7	8.9	7	81	13	65	0	24	0	75	0.80
15946--16007	13	4.4	14	80	11	65	0	24	0	75	0.80
21981--22020	21	2.0	20	85	5	53	0	45	2	52	1.14
30114--30152	20	2.0	20	89	0	60	17	41	35	5	1.72
31787--31820	10	3.4	10	87	0	50	20	5	0	73	1.04
42047--42506	106	4.3	106	95	1	778	34	24	18	22	1.96
43874--43912	20	2.0	20	89	0	60	20	41	33	5	1.74
46200--46667	230	2.0	231	94	1	830	34	11	13	40	1.81
47651--47707	31	1.9	29	86	10	80	33	3	7	56	1.43
47657--47723	31	2.2	31	78	2	73	34	2	11	50	1.54
49435--49532	21	4.8	20	75	10	81	38	21	18	21	1.93
49499--49728	20	11.5	20	80	5	223	37	24	18	19	1.94
52932--53115	33	5.2	34	75	16	144	46	17	21	14	1.83
52918--53021	33	3.1	33	86	8	147	46	19	21	13	1.84
52932--53115	19	10.4	19	79	17	227	46	17	21	14	1.83
52960--53096	52	2.6	52	98	1	265	46	16	22	13	1.83
52962--53137	52	3.4	52	90	5	232	46	17	23	13	1.83
53018--53137	33	3.5	33	86	10	186	45	17	22	14	1.84
52999--53137	71	2.0	71	100	0	278	46	17	22	14	1.84
53144--53259	53	2.2	53	96	1	216	13	23	18	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53162--53259	19	5.4	19	83	13	134	14	21	17	46	1.83
53367--53402	14	2.6	14	90	0	63	44	22	0	33	1.53
55359--55451	33	2.8	33	93	0	159	47	20	20	11	1.81
55322--55456	19	7.6	19	75	16	119	45	22	19	11	1.83
55452--55580	19	7.3	19	75	17	125	8	17	28	45	1.77
55452--55543	33	2.8	33	93	3	150	7	18	28	45	1.76
55628--56188	93	6.1	93	98	0	1090	45	19	12	22	1.83
55628--56188	185	3.0	185	98	0	1079	45	19	12	22	1.83
55628--56188	278	2.0	279	98	0	1090	45	19	12	22	1.83
57893--57982	14	5.7	14	72	23	72	43	23	24	8	1.82
57885--57999	33	3.5	33	97	0	221	46	20	23	9	1.80
57907--58004	19	5.7	19	71	22	90	43	22	23	10	1.83
58016--58072	14	3.7	14	75	20	60	8	24	22	43	1.81
58000--58080	33	2.5	33	93	0	135	8	22	23	45	1.79
58057--58132	21	3.7	21	85	3	109	11	25	18	44	1.83
58056--58133	41	1.9	41	94	0	138	12	25	17	43	1.85
58212--58282	33	2.2	33	92	0	115	47	18	22	11	1.80
58464--58518	22	2.5	22	81	0	74	20	16	40	23	1.91
58665--58858	20	9.6	20	82	5	221	19	19	25	35	1.95
58665--58858	60	3.2	60	83	0	253	19	19	25	35	1.95
58845--58927	21	4.0	21	73	6	78	25	16	24	33	1.96
58825--58923	42	2.4	43	77	11	100	21	18	23	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59126--59158	16	2.1	16	100	0	66	57	24	12	6	1.57
59540--59591	24	2.1	26	85	7	72	53	17	11	17	1.72
67312--67342	6	5.0	6	96	4	53	35	0	16	48	1.46
67636--67695	2	30.0	2	100	0	120	50	0	0	50	1.00
68111--68168	28	2.1	28	100	0	116	25	25	27	20	1.99
68740--68777	2	19.5	2	94	5	69	47	0	0	52	1.00
70830--70868	17	2.4	17	91	4	62	43	0	2	53	1.14
71679--71764	29	3.0	29	92	0	136	16	32	29	22	1.95
71823--71878	29	1.9	29	92	0	94	12	35	30	21	1.90
71882--71951	33	2.1	33	94	0	122	8	41	22	27	1.83
71967--72013	10	4.7	10	89	10	78	10	27	38	23	1.88
72053--72110	29	2.0	29	89	0	89	22	27	36	13	1.92
81284--81389	50	2.1	51	87	5	153	40	10	8	40	1.70
85772--85813	21	2.0	21	86	9	59	35	2	0	61	1.09
90951--90983	12	2.8	12	86	4	50	18	9	6	66	1.40
95758--95796	17	2.3	17	100	0	78	23	5	23	48	1.70
95872--95906	2	17.5	2	100	0	70	48	0	0	51	1.00
96200--96238	17	2.3	17	100	0	78	23	5	23	48	1.70
96314--96360	2	23.5	2	100	0	94	48	0	0	51	1.00
95682--97035	454	3.0	449	97	2	2598	31	13	10	44	1.78
96654--96692	17	2.3	17	100	0	78	23	5	23	48	1.70
96768--96808	2	20.5	2	100	0	82	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97860--97979	60	2.0	59	96	1	222	40	10	18	30	1.83
108298--108393	35	2.7	35	85	0	129	40	25	1	33	1.62
124173--124211	20	2.0	20	85	10	53	66	0	2	30	1.05
133352--133519	42	4.0	42	85	3	180	41	12	21	24	1.87
134315--134374	18	3.3	18	79	9	77	50	25	11	13	1.75
136808--136848	15	2.7	15	92	0	73	14	14	31	39	1.87
143642--143666	2	12.5	2	100	0	50	48	0	0	52	1.00
145894--145984	40	2.3	40	96	0	164	25	25	23	26	2.00
148390--148427	16	2.4	16	95	0	67	36	28	15	18	1.92
149384--149418	17	2.1	17	94	5	63	68	0	2	28	1.04
151791--151853	21	3.0	21	70	9	56	46	17	1	34	1.58
151801--151871	35	2.1	34	86	7	99	46	18	1	33	1.58
162625--162672	25	2.0	24	84	12	62	50	18	14	16	1.79
162876--162936	30	2.0	30	96	0	113	34	11	18	36	1.86
163070--163096	14	1.9	14	100	0	54	11	14	29	44	1.80

Tables:   1

The End!