genome.fa.s4058.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004058.1 Hibiscus syriacus cultivar Beakdansim tig00008875_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59325

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
236--310	23	3.5	21	78	14	64	40	22	2	34	1.68
707--775	20	3.2	21	82	14	70	40	21	4	33	1.73
721--782	23	2.8	23	85	7	85	37	22	3	37	1.71
1--1537	477	3.2	483	92	5	2594	40	10	7	40	1.69
1190--1262	23	3.2	23	86	0	101	36	21	6	34	1.81
3533--4835	183	7.1	183	94	1	2206	33	16	14	36	1.89
6038--6105	3	22.7	3	75	0	64	23	32	7	36	1.83
6038--6110	12	6.1	12	85	0	74	23	31	8	36	1.84
6060--6118	24	2.5	24	85	0	82	18	32	10	38	1.84
6042--6123	36	2.3	36	89	0	119	20	31	8	39	1.83
6064--6118	12	4.6	12	86	0	74	18	32	10	38	1.85
6060--6123	6	10.7	6	76	6	58	18	31	9	40	1.83
6060--6123	18	3.6	18	80	0	83	18	31	9	40	1.83
6060--6132	18	4.1	18	70	7	58	17	31	10	39	1.85
7588--8962	200	6.9	200	97	0	2490	31	17	14	36	1.90
7588--8962	399	3.4	399	96	1	2488	31	17	14	36	1.90
9069--9129	19	3.3	18	88	2	59	52	11	1	34	1.47
9081--9129	19	2.6	19	96	0	89	55	10	2	32	1.45
10920--10985	33	2.0	33	90	0	105	22	48	0	28	1.51
11019--11083	21	3.1	21	93	0	103	16	30	10	41	1.83
13102--13154	24	2.2	24	83	6	63	26	7	13	52	1.66
13300--13356	20	2.9	20	80	12	64	21	15	8	54	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13483--13529	20	2.3	20	89	10	78	17	19	8	55	1.67
13268--13741	182	2.6	181	89	2	691	26	17	13	42	1.86
14216--14280	2	32.5	2	96	0	121	49	1	0	49	1.10
14291--14339	25	2.0	25	88	8	73	36	8	6	48	1.58
16340--16582	81	3.0	81	94	0	414	28	18	21	31	1.97
16688--16717	13	2.3	13	94	0	51	70	0	0	30	0.88
16835--16992	21	7.8	20	72	7	86	38	25	17	18	1.92
16959--17152	20	9.6	20	81	5	221	35	25	19	19	1.95
16959--17152	60	3.2	60	83	0	253	35	25	19	19	1.95
17534--17604	33	2.2	33	89	0	106	11	23	16	47	1.79
17684--17793	21	5.8	20	74	17	108	45	18	24	11	1.83
17677--17793	41	3.1	38	81	14	145	46	17	25	11	1.81
17744--17800	14	3.7	14	75	20	60	43	22	24	8	1.81
17736--17816	33	2.5	33	95	0	144	46	22	22	8	1.78
17812--17909	19	5.7	19	70	22	81	10	24	22	42	1.84
17834--17923	14	5.7	14	74	23	81	8	25	23	42	1.83
17817--17931	33	3.5	33	95	0	212	9	24	20	45	1.81
19624--20189	93	6.1	93	98	0	1098	22	12	19	45	1.83
19624--20191	278	2.0	279	98	0	1102	22	12	19	45	1.83
20233--20361	19	7.3	19	75	17	125	45	28	17	8	1.77
20269--20361	33	2.8	32	91	4	150	46	27	18	7	1.76
20233--20361	52	2.5	52	74	14	140	45	28	17	8	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20357--20491	19	7.6	19	73	16	119	11	19	23	45	1.83
20379--20435	14	3.7	14	77	20	60	10	21	22	45	1.82
20362--20454	33	2.8	33	93	0	159	11	20	21	46	1.82
22415--22450	14	2.6	14	95	0	63	33	0	22	44	1.53
22557--22654	19	5.4	19	84	13	143	45	17	21	15	1.84
22557--22673	53	2.2	53	96	1	218	44	17	23	14	1.86
25182--25228	24	2.0	24	87	8	69	38	21	14	25	1.92
25910--26179	20	13.5	20	88	1	290	19	18	24	37	1.94
26166--26248	21	4.0	21	73	6	78	25	16	24	33	1.96
26146--26244	42	2.4	43	77	11	100	21	18	23	37	1.94
27599--27647	12	3.9	12	77	17	55	61	0	0	38	0.96
27595--27647	19	2.8	18	81	13	63	62	0	0	37	0.96
27594--27653	26	2.3	26	85	5	86	63	0	0	36	0.95
27601--27652	25	2.0	25	89	10	79	63	0	0	36	0.95
27908--28063	84	1.9	84	91	0	258	21	20	27	30	1.98
28060--28161	35	3.1	35	86	13	153	29	9	17	43	1.81
28066--28180	30	3.7	30	87	12	130	35	11	15	37	1.84
28061--28201	30	4.6	29	84	11	126	34	10	17	37	1.85
28187--28345	73	2.2	73	86	3	223	40	13	19	25	1.89
28187--28345	37	4.4	37	82	3	207	40	13	19	25	1.89
28534--28867	106	3.2	106	91	0	515	21	19	24	34	1.96
29027--29341	110	2.9	110	92	1	526	23	19	23	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34082--34126	10	4.7	10	84	13	51	62	0	0	37	0.96
34075--34125	13	4.0	13	80	17	54	66	0	0	33	0.92
34075--34121	23	2.0	23	88	8	69	68	0	0	31	0.90
34082--34125	16	2.9	15	86	10	54	63	0	0	36	0.95
48385--48418	2	17.5	2	93	6	61	50	0	0	50	1.00
48446--48603	85	1.9	85	86	2	228	29	16	20	33	1.94
48586--48648	13	4.8	13	88	0	81	31	14	23	30	1.94
48575--48648	26	2.8	26	89	0	103	31	16	22	29	1.96
48936--48966	14	2.2	14	94	0	53	77	0	9	12	0.99
51959--52324	186	2.0	187	98	1	709	33	19	15	31	1.93
54320--57074	922	3.0	920	92	1	4499	35	16	17	29	1.92

Tables:   1

The End!