Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004059.1 Hibiscus syriacus cultivar Beakdansim tig00008876_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68541

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2647--2704
15
3.7
16
72
19
50
63
1
0
34
1.04
4523--4602
22
3.6
22
76
18
94
37
13
16
32
1.88
4973--5084
54
2.1
54
84
0
143
28
21
16
33
1.95
5926--6179
75
3.4
75
82
3
298
28
22
18
29
1.98
9595--9647
8
6.6
8
95
0
88
0
30
0
69
0.88
9595--9677
16
5.4
16
81
13
84
0
25
0
74
0.82
9619--9680
10
6.7
10
80
14
55
0
20
0
79
0.74
9618--9668
8
7.0
7
80
10
50
0
21
0
78
0.75
9619--9680
18
3.4
18
74
10
63
0
20
0
79
0.74
12372--12400
12
2.3
13
94
5
51
55
6
13
24
1.63
14863--14911
23
2.1
24
81
11
57
63
2
4
30
1.24
15638--15665
7
4.0
7
100
0
56
85
0
0
14
0.59
15676--15746
27
2.7
26
75
14
65
61
2
1
33
1.19
15716--15757
22
1.9
22
85
9
59
64
2
0
33
1.07
17208--17245
3
12.7
3
83
10
51
60
0
0
39
0.97
17208--17247
21
1.9
21
94
0
71
60
0
0
40
0.97
17844--17881
18
2.1
19
90
5
60
23
7
5
63
1.42
23262--23288
4
6.8
4
100
0
54
74
0
0
25
0.83
24327--24374
16
3.2
15
88
8
55
25
33
16
25
1.96
24337--24374
16
2.4
16
95
0
67
23
34
18
23
1.96
31566--31596
4
7.8
4
92
0
53
77
0
0
22
0.77
54893--54962
3
24.0
3
89
5
108
67
0
30
2
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54776--55087
166
1.9
166
95
1
563
48
6
23
22
1.72
54940--55283
125
2.8
122
94
2
602
45
7
19
27
1.78
55239--55328
45
2.0
45
100
0
180
40
15
15
28
1.88
58363--58447
35
2.5
33
76
14
82
27
7
10
55
1.60

Tables:   1

The End!