genome.fa.s406.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000406.1 Hibiscus syriacus cultivar Beakdansim tig00000748_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62271

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3101--3200	34	2.9	34	87	0	155	37	5	6	52	1.48
3705--3777	21	3.5	21	83	7	94	20	24	34	20	1.97
5532--5610	30	2.6	29	86	8	104	56	0	0	43	0.99
6088--6117	15	2.0	15	100	0	60	46	20	0	33	1.51
7436--7490	6	9.2	6	97	0	101	49	0	1	49	1.11
17299--17348	23	2.2	23	100	0	100	12	4	32	52	1.57
17697--17745	2	24.5	2	100	0	98	48	0	0	51	1.00
22209--22275	3	23.0	3	87	6	102	64	0	1	34	1.03
22614--22988	129	2.9	129	95	0	662	24	20	31	24	1.98
22436--23156	215	3.4	211	86	6	802	24	19	31	23	1.98
22528--23074	86	6.4	86	80	10	552	25	20	31	23	1.98
22958--23273	129	2.5	129	91	3	505	24	19	31	25	1.98
22441--23241	344	2.3	344	96	1	1459	24	19	31	24	1.98
22528--23203	215	3.1	214	88	5	897	25	19	31	23	1.98
23631--23713	35	2.3	36	82	10	100	38	10	18	32	1.85
23756--23819	28	2.2	28	91	2	101	42	12	9	35	1.75
23696--23891	88	2.2	89	84	8	247	42	14	11	30	1.82
24092--24336	66	3.7	67	85	5	270	46	12	11	29	1.77
24163--24336	67	2.6	68	91	2	273	47	11	11	29	1.75
24218--24352	28	4.3	30	74	16	123	44	12	9	33	1.75
24448--24608	29	5.8	28	88	6	204	46	14	11	27	1.79
24433--24611	29	6.4	27	84	8	166	48	13	10	27	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24850--24953	36	3.0	36	80	4	115	35	12	20	31	1.90
24851--24969	36	3.4	36	78	6	111	36	13	21	29	1.91
24921--25158	105	2.3	102	82	9	270	38	12	18	30	1.88
25173--25281	38	2.9	37	80	9	114	34	11	20	33	1.88
25609--25662	14	3.9	14	86	13	76	22	0	27	50	1.50
25609--25650	4	11.0	4	90	10	70	23	0	26	50	1.50
26831--26881	12	4.2	12	80	12	50	3	15	11	68	1.34
26849--26911	31	2.0	32	84	3	83	4	14	14	66	1.40
28138--28181	13	3.3	13	79	17	54	54	13	18	13	1.71
28305--28720	211	2.0	210	85	1	564	24	22	21	31	1.98
28899--28960	32	2.0	32	96	3	117	61	9	14	14	1.57
32515--32587	3	25.0	3	88	5	114	64	0	1	34	1.02
32744--32802	27	2.2	27	100	0	118	23	23	13	38	1.91
36147--36181	15	2.4	15	90	4	54	37	5	0	57	1.23
43589--43677	41	2.2	39	86	11	133	37	23	16	22	1.94
43611--43677	21	3.2	21	67	12	66	35	26	16	20	1.94
43666--43717	20	2.5	21	84	6	70	44	23	13	19	1.86
43750--43819	20	3.5	20	69	20	56	34	21	10	34	1.87
43976--44014	16	2.4	16	82	0	51	28	5	0	66	1.12
44727--44803	24	3.2	24	92	3	129	20	20	19	38	1.93
47380--47447	20	3.4	20	79	0	82	44	20	17	17	1.87
47517--47552	16	2.2	16	90	0	54	66	13	0	19	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47667--47711	20	2.2	20	84	0	63	20	17	24	37	1.93
49190--49304	21	5.5	20	75	12	88	23	20	33	22	1.97
49190--49311	42	2.9	42	82	4	158	24	19	33	22	1.97
49653--49696	21	2.1	21	83	8	54	31	38	11	18	1.86
49713--49758	21	2.2	21	84	0	56	30	34	13	21	1.91
52010--52052	19	2.2	20	87	4	61	39	16	20	23	1.92
52062--52106	20	2.2	20	80	0	54	17	15	22	44	1.86
57900--57943	23	1.9	23	100	0	88	43	20	9	27	1.82

Tables:   1

The End!