genome.fa.s4060.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004060.1 Hibiscus syriacus cultivar Beakdansim tig00008878_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76948

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5983--6104	63	1.9	63	88	3	183	33	17	27	21	1.95
7461--7502	21	2.0	22	90	4	68	30	7	16	45	1.74
17458--17772	173	1.8	171	84	4	427	42	16	11	30	1.83
18914--19019	54	2.0	54	98	0	203	30	22	12	34	1.91
19873--19933	24	2.5	24	83	0	68	11	6	63	18	1.47
19897--19964	21	3.2	21	73	8	57	10	8	60	20	1.56
19959--20264	30	10.1	30	69	5	177	12	10	54	22	1.68
19939--20102	90	1.8	90	89	0	256	12	10	54	21	1.68
19964--20270	120	2.5	120	93	1	506	13	10	54	22	1.69
19964--20261	60	4.9	59	72	8	226	13	10	54	22	1.69
20244--20282	12	3.2	12	85	0	60	23	12	58	5	1.54
19964--20311	120	2.9	117	84	7	421	13	10	54	21	1.69
24919--25007	30	3.0	30	93	1	144	31	25	21	21	1.98
25003--25103	31	3.2	31	80	8	132	33	18	18	28	1.95
28321--28367	24	2.0	24	83	8	60	61	6	4	27	1.39
28736--28768	17	1.9	18	88	11	52	39	0	6	54	1.25
29059--29088	15	2.0	15	93	0	51	70	6	0	23	1.11
30349--30400	20	2.6	20	93	6	88	9	25	21	44	1.82
30521--30551	6	5.2	6	100	0	62	35	48	16	0	1.46
31047--31143	41	2.3	42	85	7	126	37	25	14	22	1.92
31064--31143	22	3.8	22	72	9	76	38	25	15	21	1.92
31132--31195	21	3.1	21	68	4	58	37	25	20	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32487--32816	168	2.0	160	87	5	473	23	12	25	38	1.90
34843--34921	40	1.9	42	87	5	117	56	5	2	35	1.35
34836--34902	14	5.0	13	72	18	57	59	4	1	34	1.26
37080--37179	49	2.0	49	98	0	191	50	20	10	20	1.76
37627--37995	20	18.5	20	85	4	458	34	26	18	20	1.96
38668--38714	24	2.0	24	87	8	69	25	14	21	38	1.92
40793--41080	19	16.4	19	77	17	320	47	18	20	14	1.83
40793--40882	34	2.7	33	88	6	128	46	20	20	13	1.83
40793--41061	33	7.8	33	75	17	180	47	18	20	14	1.83
40821--41102	52	5.4	55	86	10	291	46	17	20	14	1.83
40821--41102	33	8.1	36	81	15	262	46	17	20	14	1.83
40879--41118	71	3.4	71	79	13	259	46	17	20	15	1.84
41109--41210	19	5.6	19	85	12	151	14	23	17	44	1.86
41317--41353	14	2.6	14	91	0	65	45	21	0	32	1.52
43249--43377	19	7.3	19	74	17	98	46	25	17	10	1.79
43305--43361	14	3.7	14	77	20	60	45	22	21	10	1.82
43286--43377	33	2.8	33	91	0	148	46	23	19	9	1.80
43448--43917	92	5.1	93	97	1	894	45	19	12	22	1.83
45614--45727	33	3.5	33	92	2	203	44	21	24	9	1.82
45621--45732	14	6.8	18	73	22	95	42	22	25	9	1.84
45744--45798	14	3.6	14	73	21	56	9	27	23	40	1.85
45922--45990	32	2.2	32	91	0	111	46	20	21	11	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45941--45990	16	3.0	18	69	22	54	44	22	22	12	1.85
46171--46225	22	2.5	22	81	0	74	20	16	40	23	1.91
46371--46564	20	9.6	20	82	5	221	19	19	25	35	1.95
46371--46564	60	3.2	60	83	0	253	19	19	25	35	1.95
46557--46633	21	3.7	20	70	13	57	27	16	23	32	1.96
46619--46670	20	2.6	20	96	0	95	21	13	26	38	1.90
48382--48641	77	3.5	74	75	10	246	38	3	4	53	1.39
51231--51272	18	2.3	19	91	4	68	40	16	14	28	1.88
52403--52437	7	5.0	7	100	0	70	28	42	0	28	1.56
54306--54345	10	3.9	11	84	12	50	52	0	0	47	1.00
54734--55017	141	2.0	141	100	0	568	32	14	22	30	1.94
58259--58295	2	18.5	2	100	0	74	51	0	0	48	1.00
59730--59880	6	25.2	6	97	0	284	31	1	50	16	1.54
62117--62154	19	2.1	19	90	5	60	60	0	0	39	0.97
64453--64477	3	8.3	3	100	0	50	0	0	32	68	0.90
69556--69605	7	7.4	7	80	14	52	58	6	0	36	1.23
69589--69962	38	10.4	36	71	17	217	44	7	3	44	1.48
69656--69962	109	2.8	111	82	10	332	44	7	3	44	1.50
70583--71585	165	6.1	165	81	4	1030	24	20	24	30	1.99
70558--71585	245	4.2	245	93	1	1623	24	20	24	30	1.99
70558--71585	488	2.1	491	91	2	1643	24	20	24	30	1.99
74617--74659	17	2.4	18	92	3	70	65	9	13	11	1.48

Tables:   1

The End!