genome.fa.s4061.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004061.1 Hibiscus syriacus cultivar Beakdansim tig00008883_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74669

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10683--11129	43	10.4	42	77	8	314	50	6	17	25	1.69
10681--11129	129	3.5	127	75	12	405	50	6	17	25	1.69
10683--11013	85	3.9	85	75	14	220	49	5	19	25	1.70
11053--11173	43	2.8	43	81	6	136	61	7	8	23	1.50
11106--11172	22	3.0	22	68	22	59	64	7	4	23	1.38
11106--11189	43	1.9	44	83	7	109	63	7	5	23	1.43
12650--12706	28	2.0	28	96	0	105	43	14	10	31	1.79
13798--13846	21	2.4	20	80	19	57	32	16	16	34	1.91
14344--14374	2	15.5	2	93	0	53	48	0	0	51	1.00
14374--14408	2	17.5	2	100	0	70	51	0	48	0	1.00
16645--16688	23	2.0	23	86	4	63	27	0	4	68	1.09
19186--19235	21	2.3	22	79	3	57	52	2	4	42	1.31
22117--22151	12	2.9	12	100	0	70	82	0	8	8	0.83
22524--22816	53	5.5	53	84	4	347	21	26	21	31	1.98
22568--22813	108	2.3	106	87	2	341	18	27	22	31	1.97
23241--23453	80	2.7	80	92	0	336	30	20	17	31	1.96
23415--23496	42	2.0	42	90	0	128	30	18	21	29	1.97
23425--23488	22	3.0	21	72	17	69	31	20	18	29	1.96
23362--23631	135	2.0	135	86	1	380	28	21	18	31	1.97
23547--23644	42	2.3	42	87	0	133	33	22	17	26	1.96
34976--35062	41	2.1	41	91	0	138	17	19	24	39	1.92
35180--35313	6	24.5	6	97	2	177	28	53	17	0	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35180--35316	25	5.0	28	92	7	182	28	53	18	0	1.45
35180--35313	15	8.2	17	94	4	176	28	53	17	0	1.44
35314--35344	5	6.4	5	96	3	55	35	22	41	0	1.54
35831--35874	6	7.5	6	97	2	81	0	15	52	31	1.44
35871--35901	6	5.2	6	100	0	62	32	0	32	35	1.58
35841--35892	12	4.3	12	90	0	50	11	9	44	34	1.73
35841--35880	18	2.2	18	90	0	62	5	12	47	35	1.63
35983--36048	19	3.3	19	72	12	69	40	21	19	18	1.91
35992--36333	41	8.1	40	84	10	307	36	24	20	18	1.95
36061--36215	20	7.6	20	71	9	125	38	25	22	14	1.92
36236--36308	20	3.6	20	74	3	83	38	26	20	15	1.92
36130--36313	93	2.0	93	92	2	307	34	24	19	21	1.97
36231--36337	21	5.2	21	69	4	92	37	28	16	17	1.92
43024--43053	14	2.1	14	93	0	51	50	6	0	43	1.28
43138--43213	25	2.9	26	76	9	75	23	0	32	43	1.54
44704--44739	11	3.5	11	78	21	51	27	16	27	27	1.97
44695--44740	19	2.4	19	96	3	83	28	15	30	26	1.96
49378--49784	127	3.2	127	92	0	690	21	24	21	32	1.98
50203--50303	34	3.0	34	88	0	157	37	4	5	51	1.48
50825--50894	21	3.3	20	92	5	104	20	25	35	18	1.95
50887--50971	42	2.0	42	81	0	98	22	21	34	22	1.97
52703--52784	32	2.6	32	78	7	87	56	1	0	42	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53682--53774	12	7.9	12	68	13	59	21	16	26	35	1.94
53695--53853	11	13.6	11	67	16	79	23	21	24	30	1.99
53680--53792	35	3.2	35	97	0	208	25	16	25	31	1.97
53739--53830	47	2.0	47	85	8	125	26	22	22	28	1.99
53761--53854	24	4.0	24	83	4	120	24	24	24	26	2.00
55247--55300	26	2.1	26	85	0	72	27	7	20	44	1.78
56362--56412	12	4.2	12	87	0	57	43	11	5	39	1.66
56353--56412	18	3.3	18	80	0	66	41	13	8	36	1.74
56374--56412	6	6.5	6	90	0	60	46	12	2	38	1.56
59675--59702	13	2.2	13	100	0	56	39	14	14	32	1.86
60408--60467	27	2.3	27	94	2	104	56	15	13	15	1.67
61658--61691	2	17.0	2	100	0	68	50	0	0	50	1.00

Tables:   1

The End!