genome.fa.s4062.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004062.1 Hibiscus syriacus cultivar Beakdansim tig00008884_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  153756

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1420--1797	92	4.1	93	96	1	708	22	12	18	46	1.83
1841--1969	19	7.3	19	75	17	125	45	28	17	8	1.77
1877--1969	33	2.8	32	91	4	150	46	27	18	7	1.76
1841--1969	52	2.5	52	74	14	140	45	28	17	8	1.77
1973--2099	19	7.2	19	74	17	121	11	18	23	46	1.81
1987--2043	14	3.7	14	77	20	60	10	21	22	45	1.82
1973--2062	33	2.7	33	94	0	162	11	21	21	46	1.81
4017--4052	14	2.6	14	95	0	63	33	0	22	44	1.53
4159--4261	19	5.6	19	82	13	144	45	17	22	14	1.84
4251--4418	19	9.6	19	76	18	177	14	23	17	44	1.86
4257--4418	33	4.7	33	74	16	159	14	22	17	45	1.85
4251--4418	52	3.2	52	97	0	309	14	23	17	44	1.86
4476--4573	19	5.4	19	84	13	143	45	17	22	14	1.84
4476--4592	53	2.2	53	98	1	227	44	17	23	13	1.85
6680--6726	24	2.0	24	87	8	69	38	21	14	25	1.92
7409--7658	20	12.5	20	85	1	259	20	18	24	37	1.94
7645--7727	21	4.0	21	73	6	78	25	16	24	33	1.96
7625--7723	42	2.4	43	77	11	100	21	18	23	37	1.94
9527--9551	10	2.5	10	100	0	50	20	40	20	20	1.92
12221--12286	33	2.0	33	94	5	116	45	3	19	31	1.66
13732--13757	2	13.0	2	100	0	52	50	0	0	50	1.00
14819--14852	18	1.9	18	88	5	52	17	26	29	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27378--27411	16	2.1	16	94	0	59	32	8	26	32	1.87
28162--28193	15	2.1	16	94	5	57	50	18	25	6	1.70
32867--33022	31	5.0	31	93	1	251	38	23	17	20	1.93
35043--35103	30	2.0	30	96	0	113	34	18	3	44	1.66
38114--38188	29	2.6	30	79	8	84	38	14	4	42	1.65
39517--39610	44	2.1	44	78	0	98	35	12	9	42	1.76
41646--41743	33	3.0	33	95	0	169	30	9	55	5	1.53
46834--46991	80	2.0	80	93	0	271	11	24	20	43	1.85
53577--53623	2	23.5	2	100	0	94	51	0	0	48	1.00
57823--57858	18	2.0	18	89	10	56	5	16	33	44	1.71
58111--58177	14	4.8	14	94	0	116	29	25	0	44	1.54
59880--59905	5	5.2	5	100	0	52	23	57	19	0	1.40
61530--61580	22	2.3	22	75	24	54	52	0	7	39	1.30
66000--66046	20	2.5	20	86	6	62	29	2	2	65	1.15
71173--71329	81	1.9	81	84	5	210	17	34	11	36	1.86
71174--71347	81	2.1	81	82	6	201	18	33	10	36	1.85
73286--73468	84	2.2	84	79	2	188	25	22	12	40	1.88
73530--73708	83	2.1	83	81	5	200	19	23	12	44	1.85
73724--74194	167	2.8	168	82	8	518	20	26	11	41	1.87
73723--74244	84	6.2	84	77	12	450	21	25	11	41	1.86
73723--74244	251	2.1	251	81	7	605	21	25	11	41	1.86
81403--82184	111	7.3	111	83	11	972	18	32	13	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81783--82158	93	3.8	93	84	11	527	17	32	15	34	1.91
81669--82184	204	2.5	205	94	0	908	16	32	14	35	1.90
94048--94086	4	9.8	4	94	0	51	43	23	7	25	1.80
105113--105302	20	9.4	20	74	10	143	32	24	18	24	1.97
105113--105302	41	4.7	41	88	1	276	32	24	18	24	1.97
105172--105287	21	5.6	21	75	11	123	34	24	18	22	1.96
106357--106389	14	2.5	13	86	13	50	48	24	21	6	1.72
106364--106390	14	1.9	14	100	0	54	44	29	18	7	1.77
108501--108919	140	3.0	140	94	1	738	28	12	15	43	1.83
108890--109061	20	8.9	20	74	10	142	34	18	17	29	1.94
108890--109061	40	4.4	40	79	8	176	34	18	17	29	1.94
108898--109038	74	1.9	74	86	0	201	36	20	17	26	1.94
109114--109296	72	2.7	69	82	13	193	51	16	2	29	1.58
110609--110709	42	2.4	42	76	0	103	26	16	33	22	1.96
111270--111308	19	2.0	20	90	5	62	51	20	15	12	1.76
111313--111388	33	2.3	33	80	11	84	14	19	18	47	1.83
113322--113395	20	3.7	20	85	0	85	43	22	17	16	1.88
113998--114049	21	2.5	21	84	3	70	19	23	21	36	1.95
114789--115110	158	2.0	158	98	0	626	32	5	15	45	1.70
117337--117412	28	3.0	25	70	12	73	63	2	0	34	1.09
119741--119791	2	25.5	2	100	0	102	50	0	0	49	1.00
121354--121409	29	1.9	29	100	0	112	23	33	17	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137525--137686	31	5.3	30	71	15	118	47	6	2	43	1.43
140922--141083	60	2.7	60	80	5	168	34	22	2	40	1.67
141891--142298	207	2.0	204	93	1	699	26	11	19	42	1.85

Tables:   1

The End!