genome.fa.s4063.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004063.1 Hibiscus syriacus cultivar Beakdansim tig00008885_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50045

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1991--2352	172	2.1	179	89	5	553	42	13	16	27	1.85
9258--9448	101	1.9	101	82	4	242	34	12	12	40	1.80
9237--9465	101	2.3	101	78	6	232	33	11	11	42	1.78
25684--25743	22	2.6	22	85	12	84	45	5	0	50	1.23
25922--25989	31	2.2	31	81	0	82	48	10	11	29	1.73
29613--29695	2	42.0	2	95	2	150	48	0	1	50	1.08
29722--29989	37	7.2	36	84	8	288	44	4	5	45	1.48
29966--30053	32	2.8	31	89	8	133	52	3	5	38	1.42
30014--30122	42	2.8	38	83	15	141	45	3	4	45	1.41
31335--31433	26	3.6	27	73	18	87	29	5	1	64	1.21
31417--31466	24	2.1	24	88	7	75	16	4	2	78	1.00
31415--31466	25	2.0	24	89	10	77	17	3	1	76	1.02
31425--31479	25	2.2	25	81	12	60	16	5	3	74	1.15
31536--31595	28	2.3	25	81	16	68	11	10	3	75	1.17
34364--34414	23	2.2	23	92	0	84	29	27	25	17	1.98
34440--34656	103	2.1	102	90	2	346	37	23	13	26	1.91
38574--39948	84	16.7	83	77	6	1214	31	25	18	24	1.98
38574--39926	164	8.2	164	81	4	1388	31	25	18	24	1.98
38574--39892	248	5.3	247	82	6	1426	31	25	18	24	1.98
40338--40619	73	3.7	75	82	9	285	43	4	6	45	1.50
40351--40619	38	7.2	36	83	8	254	44	4	5	45	1.48
40596--40687	34	2.7	33	86	8	123	52	3	5	39	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40353--40743	36	10.6	36	73	19	151	45	4	5	44	1.47
40353--40745	37	10.6	38	74	17	141	46	4	5	44	1.47
40646--40755	40	2.8	38	75	21	118	46	2	4	46	1.37
40759--40792	16	2.1	17	94	5	61	29	0	0	70	0.87
40763--40792	13	2.3	13	100	0	60	30	0	0	70	0.88
42077--42128	25	2.0	26	96	3	97	19	3	0	76	0.93
42086--42125	12	3.4	11	81	18	53	17	2	0	80	0.83
42087--42141	25	2.2	25	83	6	67	18	5	1	74	1.10
42214--42281	12	5.6	12	77	19	54	25	2	1	70	1.09
42233--42285	4	12.8	4	78	21	56	22	3	1	71	1.12
42220--42287	26	2.6	25	76	21	77	23	2	1	72	1.07
43489--43523	17	2.0	18	88	5	54	40	8	0	51	1.33
44477--44533	29	1.9	30	85	3	80	14	17	19	49	1.80
44559--44593	13	2.7	13	100	0	70	25	17	22	34	1.96
44982--45040	29	2.0	29	96	0	109	23	6	32	37	1.81
45264--45331	29	2.3	30	82	7	86	51	17	13	17	1.76
47002--47049	21	2.3	21	100	0	96	45	12	14	27	1.81

Tables:   1

The End!