genome.fa.s4066.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004066.1 Hibiscus syriacus cultivar Beakdansim tig00008895_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96956

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1204--1252	20	2.5	20	86	0	62	38	22	12	26	1.89
2808--2868	25	2.5	24	82	15	81	52	0	0	47	1.00
2821--2862	20	2.0	21	86	9	59	52	0	0	47	1.00
2845--2890	22	2.1	22	84	8	58	54	0	4	41	1.20
3331--3403	21	3.5	21	88	3	112	41	15	23	20	1.90
3842--3894	20	2.7	20	74	11	54	13	26	16	43	1.85
5593--5967	94	4.1	94	94	2	620	21	12	18	47	1.82
6062--6099	20	1.9	20	100	0	76	50	28	15	5	1.66
6108--6148	14	2.9	14	88	0	64	7	21	24	46	1.77
6136--6187	21	2.6	20	78	6	61	13	19	21	46	1.84
6584--6706	42	2.9	42	80	2	122	22	36	17	22	1.95
6640--6706	21	3.2	21	66	6	55	23	35	20	19	1.95
8070--8105	14	2.6	14	95	0	63	33	0	22	44	1.53
8215--8303	33	2.8	32	86	6	110	44	22	21	11	1.83
8244--8307	19	3.7	18	72	20	64	45	25	18	10	1.82
8247--8328	33	2.7	29	82	14	94	45	25	17	12	1.83
8342--8396	20	2.8	19	83	2	65	18	21	21	38	1.94
8363--8435	20	3.6	20	70	17	51	23	16	24	35	1.95
10907--10960	24	2.2	24	93	0	90	40	20	18	20	1.91
10907--10974	24	2.8	24	84	0	64	38	20	17	23	1.93
11831--12029	41	4.8	41	91	1	292	38	16	23	22	1.93
11831--12029	21	9.7	21	78	5	210	38	16	23	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11831--12028	62	3.2	62	78	5	197	37	16	23	22	1.93
23002--23030	2	14.5	2	100	0	58	48	0	0	51	1.00
31208--31253	2	24.0	2	80	8	51	43	0	56	0	0.99
35619--35661	19	2.3	19	91	0	77	30	13	6	48	1.69
35779--35808	14	2.1	14	100	0	60	20	43	6	30	1.77
41906--41936	2	15.5	2	93	0	53	54	0	0	45	0.99
43893--43949	12	5.1	11	82	16	64	26	0	1	71	0.95
43893--43936	4	11.0	4	81	18	56	25	0	2	72	0.96
43903--43949	16	3.2	15	80	19	55	25	0	2	72	0.96
49124--50287	106	11.0	106	94	0	1981	33	25	18	22	1.97
49124--50714	212	7.7	212	89	5	2299	33	24	18	22	1.97
49124--50714	318	5.1	318	88	5	2317	33	24	18	22	1.97
50190--50339	43	3.4	43	69	18	139	34	25	20	19	1.96
50235--50375	45	3.2	44	66	18	112	33	26	18	21	1.97
50185--50669	88	5.0	94	80	12	511	34	24	18	22	1.96
50367--50714	106	3.3	104	85	5	447	33	24	19	22	1.97
51381--51439	12	4.7	13	76	19	54	23	0	1	74	0.91
51396--51429	4	8.5	4	87	12	52	23	0	2	73	0.97
51381--51452	8	8.5	8	77	11	54	20	1	1	76	0.94
59856--59930	15	5.0	15	90	0	114	50	1	0	48	1.09
59934--60089	32	5.5	31	71	27	141	37	0	8	53	1.37
59918--60765	54	15.8	54	70	20	512	35	0	11	52	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60015--60057	22	2.0	22	95	0	77	39	2	9	48	1.48
59929--60765	188	4.5	188	77	13	914	35	0	11	52	1.40
60037--60750	80	8.9	80	83	11	831	34	0	12	52	1.40
59966--60299	134	2.5	129	88	4	524	35	0	11	52	1.43
60116--60331	32	7.7	32	73	23	186	34	0	12	52	1.39
60149--60267	22	5.0	22	77	18	130	35	0	12	52	1.40
60256--60309	14	3.6	14	72	18	54	37	0	5	57	1.22
59918--60765	242	3.5	242	90	3	1246	35	0	11	52	1.40
60358--60573	32	7.7	32	75	21	177	37	0	10	52	1.35
60391--60509	22	5.0	23	78	18	111	38	0	10	51	1.36
60498--60551	14	3.6	14	72	18	54	37	0	3	59	1.15
60574--60696	26	4.7	25	71	20	90	30	0	15	53	1.42
60713--60755	22	2.0	22	90	0	68	37	0	9	53	1.33
60780--60838	31	1.9	31	92	0	100	42	10	6	40	1.65
64899--64992	30	3.1	30	100	0	188	53	3	13	29	1.56
69469--69501	16	2.0	17	94	5	59	36	24	9	30	1.86
71026--71051	2	13.0	2	100	0	52	50	0	50	0	1.00
74342--74375	16	2.1	16	89	10	52	32	2	2	61	1.26
81423--81482	19	2.9	20	76	20	61	25	1	3	70	1.12
81877--81933	23	2.4	24	83	11	73	61	1	0	36	1.07
92383--92432	21	2.4	21	81	15	52	56	12	18	14	1.68
92651--92715	31	2.1	31	85	5	87	30	9	9	50	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92655--92727	31	2.4	31	80	0	83	28	10	12	47	1.75
95355--95384	13	2.3	13	94	0	51	36	43	0	20	1.52
95680--95767	27	3.3	27	95	3	160	35	20	10	34	1.86
95680--95759	26	3.0	26	98	1	151	33	22	11	32	1.89
96036--96077	14	2.8	16	79	17	54	57	0	4	38	1.20

Tables:   1

The End!