Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004068.1 Hibiscus syriacus cultivar Beakdansim tig00008908_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76180

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3398--3438
21
2.0
21
95
0
73
36
2
19
41
1.65
3376--3432
28
2.1
28
83
9
73
36
1
19
42
1.62
3677--3703
13
2.1
13
100
0
54
51
0
7
40
1.30
25806--25839
11
3.1
11
91
0
50
0
14
0
85
0.60
26226--26263
19
2.0
19
94
0
67
28
10
10
50
1.70
35894--35946
26
2.0
26
100
0
106
52
9
26
11
1.67
39575--39604
16
1.9
15
93
6
51
13
26
40
20
1.89
39788--39847
3
20.7
3
77
16
56
68
0
5
26
1.10
39784--39853
24
2.8
24
85
14
90
70
0
4
25
1.06
39926--39991
32
2.1
32
91
0
105
43
6
3
46
1.43
39970--40233
38
7.2
36
77
10
232
45
5
3
45
1.44
40018--40237
74
2.9
74
84
7
266
46
5
3
45
1.42
40745--42024
165
7.7
165
83
4
1375
23
20
25
29
1.99
40794--42024
249
5.0
249
83
4
1493
23
21
25
29
1.99
40745--42024
330
3.9
328
86
3
1516
23
20
25
29
1.99
45125--45170
19
2.4
19
96
0
83
67
8
10
13
1.42
45930--45973
16
2.8
16
96
0
79
29
38
9
22
1.85
46871--46895
12
2.1
12
100
0
50
60
0
0
40
0.97
48347--48376
16
1.9
15
93
6
51
13
26
40
20
1.89
48560--48625
3
22.7
3
79
14
68
68
0
4
27
1.09
48684--48763
31
2.6
32
82
4
83
50
5
2
42
1.37
48704--48768
31
2.1
32
91
2
105
41
4
4
49
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48754--49012
38
6.9
36
79
8
268
44
5
3
46
1.43
48754--49012
74
3.5
72
83
8
286
44
5
3
46
1.43
50287--50366
31
2.6
31
86
7
112
40
13
7
38
1.73
52603--52656
27
2.0
28
82
10
67
24
7
29
38
1.82
62600--62636
16
2.3
16
95
0
65
27
2
16
54
1.56
65492--65605
41
2.8
41
97
0
210
48
10
5
35
1.60
68107--68148
21
2.0
21
95
0
75
38
11
28
21
1.89

Tables:   1

The End!