Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000407.1 Hibiscus syriacus cultivar Beakdansim tig00000749_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61972

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1069--1109
21
2.0
21
90
4
66
34
0
0
65
0.93
10278--10327
17
2.9
17
93
0
82
22
24
38
16
1.93
10343--10387
19
2.4
19
88
7
65
26
26
26
20
1.99
18711--18746
13
2.8
13
95
0
63
44
16
0
38
1.48
20192--20357
7
25.5
6
67
28
58
42
5
18
33
1.73
20192--20388
46
4.3
46
96
0
351
42
6
18
32
1.75
20532--20595
21
3.2
21
65
24
57
25
21
28
25
1.99
25807--25874
35
1.9
35
96
0
127
16
32
29
22
1.95
25812--25875
20
3.5
20
66
27
59
12
34
29
23
1.92
26282--26478
46
4.3
46
98
0
369
42
6
18
32
1.76
34663--34723
23
2.7
23
86
0
95
26
26
27
19
1.99
36681--36710
3
9.7
3
92
7
51
0
33
0
66
0.92
36678--36710
16
2.0
17
94
5
59
0
33
0
66
0.92
37616--37702
25
3.4
25
88
4
122
36
11
10
41
1.75
37744--37808
31
2.1
31
86
8
89
36
6
21
35
1.79
38027--38087
23
2.7
23
89
0
95
18
27
26
27
1.98
45431--45510
2
40.0
2
97
0
151
48
0
1
50
1.08
45596--45635
19
2.0
20
86
13
57
65
5
0
30
1.14

Tables:   1

The End!