Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004070.1 Hibiscus syriacus cultivar Beakdansim tig00008911_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64211

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1250--1318
35
2.0
35
88
5
104
33
17
20
28
1.95
3145--3221
38
2.0
39
94
2
138
48
11
15
24
1.79
3860--3894
2
17.5
2
100
0
70
51
0
0
48
1.00
5392--5424
16
1.9
18
88
11
52
57
0
0
42
0.98
7741--7793
25
2.1
25
86
6
72
28
22
18
30
1.98
9850--9886
3
12.3
3
100
0
74
32
0
0
67
0.91
10621--10681
31
2.0
31
87
6
88
47
0
0
52
1.00
10650--10688
17
2.2
18
86
4
53
51
0
2
46
1.14
12971--13295
124
2.6
123
86
5
417
24
18
15
41
1.89
13490--14242
113
6.7
113
82
7
623
28
19
13
38
1.90
13604--14248
113
5.8
111
85
6
794
28
19
13
37
1.91
12845--13827
516
1.9
508
82
8
1174
26
19
14
39
1.90
13610--14237
218
2.8
224
86
3
842
28
19
14
37
1.91
13604--14239
331
1.9
333
89
5
989
28
19
13
37
1.91
15060--15139
22
3.6
22
93
0
124
35
12
20
32
1.90
22158--22230
36
2.1
34
82
5
83
65
2
9
21
1.34
22195--22299
20
5.3
19
70
13
68
56
7
14
21
1.63
23841--23911
28
2.6
28
82
10
85
60
1
4
33
1.25
24386--24446
31
2.0
31
87
6
88
47
0
0
52
1.00
24415--24453
17
2.2
18
86
4
53
51
0
2
46
1.14
26092--26132
16
2.6
16
100
0
82
26
19
26
26
1.99
26363--26388
3
8.7
3
100
0
52
65
0
0
34
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27297--27355
29
2.0
29
90
0
91
30
6
22
40
1.79
28538--28609
4
18.0
4
100
0
144
25
50
0
25
1.50
33181--33213
13
2.6
13
90
4
50
69
0
0
30
0.88
33307--33331
12
2.1
12
100
0
50
60
0
0
40
0.97
38306--38351
2
24.0
2
79
16
53
52
2
2
43
1.25
38309--38351
12
3.6
11
85
14
59
53
2
2
41
1.26
40738--40982
105
2.3
108
80
6
273
25
21
15
37
1.93
42228--42312
35
2.4
34
83
16
104
10
11
0
77
0.99
42228--42264
7
5.6
7
81
12
51
10
13
0
75
1.04
42253--42292
10
4.2
10
93
6
66
7
10
0
82
0.84
42241--42312
16
4.5
16
76
20
62
9
11
0
79
0.95
42228--42301
26
2.7
26
82
14
96
9
12
0
78
0.97
42228--42308
19
4.6
16
85
11
81
9
12
0
77
0.98
58186--58229
16
2.6
17
75
7
54
43
0
0
56
0.99
59037--59084
24
2.0
24
95
0
87
37
14
29
18
1.91

Tables:   1

The End!