genome.fa.s4072.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004072.1 Hibiscus syriacus cultivar Beakdansim tig00008917_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127479

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6164--6232	36	1.9	36	90	0	111	21	14	17	46	1.84
10152--10177	3	8.7	3	100	0	52	69	0	0	30	0.89
12522--12566	21	2.1	22	83	4	56	37	4	0	57	1.19
15771--15954	92	2.0	92	98	0	359	36	8	16	38	1.80
31134--31347	76	2.8	75	89	4	315	28	1	12	57	1.44
31922--31955	17	2.0	17	88	0	50	23	0	2	73	0.97
35554--35623	23	3.0	23	95	0	131	47	4	22	25	1.70
36806--36871	21	3.4	21	66	23	63	45	18	4	31	1.69
43203--43242	16	2.5	16	95	0	71	20	32	20	27	1.97
43402--43598	36	5.5	35	85	7	261	29	24	25	19	1.99
47194--47362	87	1.9	87	89	4	261	34	12	16	36	1.86
51223--51266	14	3.0	14	81	18	54	65	0	0	34	0.93
51223--51265	17	2.6	18	85	14	65	67	0	0	32	0.91
51582--52301	84	8.7	84	81	5	779	24	21	25	29	1.99
51600--52301	166	4.2	165	86	3	1000	24	21	24	29	1.99
55694--55738	19	2.4	19	92	3	74	66	8	13	11	1.44
59871--59915	13	3.6	13	77	16	51	66	0	0	33	0.92
59885--59927	17	2.6	18	85	14	65	67	0	0	32	0.91
61147--61190	20	2.3	18	77	11	52	25	22	9	43	1.82
62925--62976	3	17.7	3	96	4	97	67	0	0	32	0.91
67827--67864	20	2.0	19	90	10	60	47	10	23	18	1.79
67826--67870	20	2.6	16	80	19	54	44	11	22	22	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68707--68781	40	1.9	38	83	5	89	49	5	1	44	1.33
68699--68781	39	2.1	38	82	8	96	50	4	1	43	1.31
69754--69779	7	3.7	7	100	0	52	38	30	15	15	1.88
70509--70632	20	6.3	19	73	13	81	37	25	14	23	1.93
71066--71108	20	2.2	20	91	4	70	44	25	18	11	1.84
72818--72863	21	2.2	21	88	0	65	19	21	26	32	1.97
72824--72865	21	2.0	21	95	0	75	16	19	30	33	1.94
74735--74770	14	2.6	14	95	0	63	33	0	22	44	1.53
75160--75245	39	2.2	39	97	0	163	17	15	19	47	1.82
75558--75594	18	2.1	18	89	0	56	51	10	5	32	1.60
75981--76030	25	2.0	25	92	0	82	44	20	8	28	1.79
76094--76160	20	3.3	20	83	8	91	35	22	19	22	1.96
76210--76247	20	1.9	20	94	0	67	21	18	18	42	1.90
76538--76578	12	3.4	12	86	0	55	17	2	24	56	1.53
76545--76579	6	5.8	6	86	0	52	17	2	20	60	1.49
78814--78867	24	2.2	24	93	0	90	40	20	18	20	1.91
78814--78881	24	2.8	24	84	0	64	38	20	17	23	1.93
79792--79860	19	3.6	19	88	2	93	27	13	18	40	1.88
79783--79860	39	2.0	39	85	5	104	29	14	17	38	1.89
79884--79937	20	2.7	20	77	11	65	25	12	31	29	1.93
80321--80361	21	2.0	21	85	0	55	46	26	4	21	1.72
80299--80379	27	3.0	28	81	3	85	46	30	2	19	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80685--80733	21	2.4	20	86	3	62	44	26	2	26	1.65
80863--80902	7	5.7	7	84	0	53	60	15	0	25	1.35
80943--81024	20	4.2	19	78	4	83	52	21	0	25	1.47
80931--81017	39	2.2	39	93	0	147	50	24	0	25	1.49
81301--81348	16	2.9	16	79	14	53	43	0	2	54	1.12
81547--81609	25	2.5	25	100	0	126	34	15	0	49	1.45
84924--84967	20	2.2	20	100	0	88	45	13	4	36	1.64
86339--86390	24	2.2	24	83	13	63	17	9	28	44	1.80
86669--86781	59	1.9	60	82	8	142	38	22	3	36	1.71
86914--87060	60	2.5	60	75	6	145	42	4	19	33	1.72
88876--88950	20	3.7	20	78	1	69	28	22	24	25	2.00
91285--91344	22	2.8	21	83	16	79	15	30	16	38	1.89
91394--91443	20	2.5	20	93	0	82	24	32	14	30	1.94
94536--94642	7	15.3	7	83	3	99	48	31	0	19	1.49
94972--95014	21	2.0	22	81	4	52	53	4	9	32	1.53
95653--95718	30	2.2	30	94	0	114	16	31	22	28	1.96
95666--95747	30	2.7	30	83	7	87	17	32	28	21	1.96
95951--95997	2	23.5	2	100	0	94	48	0	0	51	1.00
109400--109425	3	8.7	3	100	0	52	30	69	0	0	0.89
117874--117940	27	2.5	27	100	0	134	29	19	23	26	1.98
120606--120667	21	2.8	21	69	11	61	46	0	4	48	1.23
120719--120773	14	4.2	13	77	11	51	40	3	9	47	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120959--121048	21	4.4	21	70	23	84	38	0	5	55	1.23
120975--121003	15	1.9	15	100	0	58	34	0	6	58	1.25
120959--121083	60	2.1	59	90	1	196	40	1	8	50	1.41
122770--122827	13	4.6	13	78	8	75	39	6	5	48	1.52
122829--122873	21	2.1	22	84	12	58	55	6	0	37	1.26
122739--122934	96	2.0	95	81	9	229	47	9	2	40	1.49
122809--123000	61	3.2	59	87	9	289	48	9	2	39	1.49
122753--122997	24	10.2	25	66	23	107	48	8	2	41	1.46
124977--125081	33	3.1	33	82	12	124	49	16	3	30	1.63

Tables:   1

The End!