genome.fa.s4073.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004073.1 Hibiscus syriacus cultivar Beakdansim tig00008918_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  150804

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6138--6194	24	2.3	24	96	3	105	22	7	21	49	1.73
18288--18351	27	2.4	27	82	7	78	43	17	25	14	1.86
24822--24931	25	4.3	26	83	6	127	48	0	7	43	1.37
24818--24931	26	4.3	25	83	9	129	48	0	7	43	1.36
24945--25004	27	2.2	27	85	11	79	41	0	6	51	1.28
24999--25076	6	13.0	6	80	8	61	19	3	2	74	1.09
31469--31556	8	10.9	8	75	11	56	14	4	2	78	1.01
31476--31581	5	20.8	5	71	22	53	16	3	2	76	1.05
31476--31540	33	2.0	33	84	6	87	12	4	1	81	0.91
31476--31569	14	6.6	14	73	21	56	17	3	2	77	0.99
31515--31574	17	3.5	17	80	15	61	23	1	1	73	1.01
31455--31543	22	4.2	20	73	15	72	15	5	1	77	1.01
31670--31845	9	19.6	9	68	21	63	14	6	3	75	1.15
31665--31830	14	12.1	13	70	22	51	13	7	3	75	1.15
33379--33427	18	2.8	18	90	3	73	28	32	6	32	1.82
34949--35067	63	1.9	63	89	0	184	52	10	5	31	1.58
43664--43741	23	3.5	22	79	8	70	37	2	1	58	1.20
43664--43726	23	2.7	23	81	13	76	33	3	1	61	1.21
49079--49125	19	2.5	19	85	0	58	48	4	2	44	1.34
52002--52043	22	1.9	22	90	9	68	33	4	0	61	1.17
52578--52614	19	1.9	19	88	0	56	43	0	2	54	1.14
52579--52622	19	2.4	18	80	3	52	52	0	2	45	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54433--54471	19	2.1	19	95	0	69	28	20	30	20	1.98
55353--55398	19	2.4	19	89	7	67	34	4	6	54	1.46
55725--55800	40	1.9	40	83	0	98	48	5	1	44	1.33
56606--56635	3	10.0	3	100	0	60	0	33	0	66	0.92
58777--58850	31	2.4	31	81	2	85	41	14	8	35	1.76
61647--61676	13	2.2	14	94	5	53	0	16	0	83	0.65
64164--64188	12	2.1	12	100	0	50	52	0	24	24	1.48
75390--75415	3	8.7	3	100	0	52	0	0	30	69	0.89
90413--90454	14	2.9	15	85	3	50	47	2	26	23	1.64
98319--98345	11	2.5	11	100	0	54	14	37	18	29	1.91
102898--102929	2	16.0	2	100	0	64	50	0	0	50	1.00
107747--107997	5	51.8	5	93	6	446	40	0	0	59	0.97
109072--109132	29	2.2	27	80	8	68	42	3	0	54	1.17
109247--109299	19	2.8	20	75	16	58	64	0	0	35	0.94
109253--109314	18	3.2	20	78	19	62	61	0	1	37	1.06
109282--109350	23	2.9	25	67	20	58	57	1	1	39	1.16
109317--109473	63	2.5	64	86	10	225	56	3	0	40	1.15
109370--109437	23	2.8	24	84	10	77	52	2	0	44	1.16
109364--109445	12	6.7	12	75	15	69	56	3	0	40	1.17
114424--114466	20	2.2	20	87	8	61	23	20	9	46	1.79
118735--118833	29	3.3	29	71	15	85	33	12	19	35	1.88
119824--119864	21	2.0	21	90	4	66	39	19	12	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124977--125009	2	16.5	2	93	0	57	51	0	0	48	1.00
125193--125436	5	48.8	5	97	0	299	20	11	20	48	1.79
126694--126755	18	3.2	20	78	19	62	61	0	1	37	1.06
126723--126791	23	2.9	25	67	20	58	57	1	1	39	1.16
131745--131787	20	2.2	20	87	8	61	23	20	9	46	1.79
134838--134936	29	3.3	29	71	15	85	33	12	19	35	1.88
135357--135395	18	2.2	18	100	0	78	58	5	0	35	1.20
137248--137469	27	8.2	27	81	5	225	15	25	26	32	1.95
141218--141611	157	2.5	156	89	1	590	47	6	18	27	1.72
144179--144284	52	2.0	52	98	0	203	53	15	8	22	1.68
147653--147684	15	2.1	15	100	0	64	59	12	9	18	1.59
147911--147993	28	3.1	28	86	5	100	43	4	2	49	1.37

Tables:   1

The End!