genome.fa.s4076.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004076.1 Hibiscus syriacus cultivar Beakdansim tig00008922_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85911

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3007--3167	65	2.5	64	85	5	209	30	24	18	26	1.98
8933--9013	24	3.6	23	68	13	69	22	25	23	28	1.99
11665--11745	37	2.2	37	82	6	92	32	16	19	32	1.94
20593--20629	17	2.2	17	95	0	65	37	0	0	62	0.96
20856--20902	20	2.3	20	96	0	85	36	25	19	19	1.95
20896--21003	20	5.3	20	87	5	146	41	25	12	19	1.87
20896--21062	60	2.8	60	79	9	162	40	23	11	24	1.88
20970--21042	19	3.7	19	90	5	101	35	23	9	31	1.87
20851--21042	40	4.8	40	77	12	148	39	23	13	22	1.90
20930--21061	20	6.7	20	82	7	117	38	23	10	27	1.88
20896--21062	40	4.2	40	78	9	121	40	23	11	24	1.88
20975--21083	19	5.6	19	79	6	76	35	22	10	32	1.87
21991--22044	24	2.2	24	93	0	90	20	18	20	40	1.91
22671--22744	20	3.7	20	96	0	130	21	17	22	37	1.94
22674--22849	60	2.9	61	79	12	161	21	18	21	39	1.93
22671--22803	40	3.3	41	76	16	109	21	18	21	37	1.94
22754--22792	20	2.0	20	94	0	69	23	23	17	35	1.95
22791--22839	20	2.5	20	90	3	73	18	12	20	48	1.79
22846--22902	21	2.8	21	81	2	71	36	14	19	29	1.91
24920--24952	2	17.0	2	93	6	59	51	0	0	48	1.00
44630--44667	20	1.9	20	88	0	58	39	15	5	39	1.70
44635--45113	198	2.4	198	81	4	529	31	13	14	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48236--48279	20	2.3	19	84	7	54	47	6	25	20	1.74
49248--50322	200	5.4	199	87	6	1420	30	13	16	39	1.86
49248--50322	401	2.7	398	88	3	1525	30	13	16	39	1.86
54308--54350	21	2.0	22	86	13	63	51	0	11	37	1.39
58773--58831	22	2.6	23	91	5	102	23	30	27	18	1.98
59949--59993	21	2.1	21	87	0	63	15	24	28	31	1.96
61417--61456	21	1.9	21	84	0	53	37	32	0	30	1.58
65662--65714	15	3.5	15	92	0	88	32	3	47	16	1.65
66189--67152	198	4.9	198	94	1	1654	31	16	15	36	1.91
67468--67535	19	3.7	18	84	7	82	52	11	2	32	1.53
67482--67535	19	2.8	19	94	0	90	53	11	3	31	1.53
68685--68720	17	2.1	17	100	0	72	30	11	8	50	1.67
69022--69060	18	2.2	18	90	0	60	7	33	0	58	1.26
69710--69765	24	2.4	24	77	14	64	51	8	0	39	1.33
71646--72245	182	3.3	181	84	3	733	27	16	12	43	1.83
76368--76413	22	2.1	22	84	4	58	43	0	8	47	1.34
79695--79817	64	1.9	63	85	4	167	35	17	18	27	1.94
79701--79854	64	2.4	64	78	9	163	34	19	18	27	1.95
80219--80299	29	2.8	29	92	3	128	41	17	23	17	1.89
80383--80416	15	2.3	15	89	0	50	17	17	32	32	1.94

Tables:   1

The End!