Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004077.1 Hibiscus syriacus cultivar Beakdansim tig00008923_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64733
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Found at i:12073 original size:24 final size:24
Alignment explanation
Indices: 12021--12073 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
12011 TATTTAAATG
*
12021 ATAAACGAACACAAATAAACAAAC
1 ATAAACGAACACAAACAAACAAAC
* * * *
12045 GTAAACGAACATAAACGAACCAAC
1 ATAAACGAACACAAACAAACAAAC
12069 ATAAA
1 ATAAA
12074 ATTATTTAGT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.62, C:0.21, G:0.08, T:0.09
Consensus pattern (24 bp):
ATAAACGAACACAAACAAACAAAC
Found at i:12844 original size:92 final size:92
Alignment explanation
Indices: 12528--12803 Score: 525
Period size: 92 Copynumber: 3.0 Consensus size: 92
12518 CCAAAACCAC
*
12528 TATACTAATTACCAACTGAAAATCAGGTCTGATACAACAAAAACATATGTTCAATATCCAATAAT
1 TATACTAATTACTAACTGAAAATCAGGTCTGATACAACAAAAACATATGTTCAATATCCAATAAT
12593 AATTTCACTAATTTACATATATATATA
66 AATTTCACTAATTTACATATATATATA
12620 TATACTAATTACTAACTGAAAATCAGGTCTGATACAACAAAAACATATGTTCAATATCCAATAAT
1 TATACTAATTACTAACTGAAAATCAGGTCTGATACAACAAAAACATATGTTCAATATCCAATAAT
12685 AATTTCACTAATTTACATATATATATA
66 AATTTCACTAATTTACATATATATATA
12712 TATACTAATTACTAACTGAAAATCAGGTCTGATACAACAAAAACATATGTTCAATATCCAATAAT
1 TATACTAATTACTAACTGAAAATCAGGTCTGATACAACAAAAACATATGTTCAATATCCAATAAT
* *
12777 AATTTCACTAATATATATATATATATA
66 AATTTCACTAATTTACATATATATATA
12804 GAGAGAGATT
Statistics
Matches: 181, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
92 181 1.00
ACGTcount: A:0.46, C:0.15, G:0.05, T:0.33
Consensus pattern (92 bp):
TATACTAATTACTAACTGAAAATCAGGTCTGATACAACAAAAACATATGTTCAATATCCAATAAT
AATTTCACTAATTTACATATATATATA
Found at i:16111 original size:3 final size:3
Alignment explanation
Indices: 16103--16128 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
16093 TTCAACACTT
16103 GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GA
16129 CGACGACGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:16161 original size:5 final size:5
Alignment explanation
Indices: 16151--16176 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
16141 AGAGAGACCC
16151 AGAAA AGAAA AGAAA AGAAA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA AGAAA A
16177 AGTACTGAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:21332 original size:14 final size:14
Alignment explanation
Indices: 21313--21341 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
21303 CCTGTGTTCC
21313 CCTGTTTGCATTTG
1 CCTGTTTGCATTTG
21327 CCTGTTTGCATTTG
1 CCTGTTTGCATTTG
21341 C
1 C
21342 TTCCACTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.24, G:0.21, T:0.48
Consensus pattern (14 bp):
CCTGTTTGCATTTG
Found at i:22044 original size:105 final size:105
Alignment explanation
Indices: 21875--22071 Score: 340
Period size: 105 Copynumber: 1.9 Consensus size: 105
21865 TGCTTTCTCA
* *
21875 AAGGCATAAAGATCCTGAAGTGCTACCCACCAAGGAGCAGCCTTGCTCTACCTCAAGAAAGATTG
1 AAGGCATAAAGATCCTGAAGTGCTACCCACAAAGGAGCACCCTTGCTCTACCTCAAGAAAGATTG
*
21940 ATGAGGCCTTTGTTCAATCGACGCATGGGTTGCCTTCGCG
66 ATGAGGCCTTTGTTCAAGCGACGCATGGGTTGCCTTCGCG
* *
21980 AAGGCATAAAGATCCTGAAGTGCTACCCAGAAAGGAGCACCCTTGCTCTACCTCAGGAAAGATTG
1 AAGGCATAAAGATCCTGAAGTGCTACCCACAAAGGAGCACCCTTGCTCTACCTCAAGAAAGATTG
*
22045 ATGAGGCCTTTGTTCAAGGGACGCATG
66 ATGAGGCCTTTGTTCAAGCGACGCATG
22072 AGCATGTCCC
Statistics
Matches: 86, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
105 86 1.00
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.22
Consensus pattern (105 bp):
AAGGCATAAAGATCCTGAAGTGCTACCCACAAAGGAGCACCCTTGCTCTACCTCAAGAAAGATTG
ATGAGGCCTTTGTTCAAGCGACGCATGGGTTGCCTTCGCG
Found at i:23254 original size:19 final size:19
Alignment explanation
Indices: 23213--23259 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 19
23203 TTTAAATAAA
23213 TTTTAACATAAAATATATAT
1 TTTTAA-ATAAAATATATAT
*
23233 TTTTAAATGAAAATAT-TTT
1 TTTTAAAT-AAAATATATAT
23252 TTTTAAAT
1 TTTTAAAT
23260 TAAGTTAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 12 0.48
20 13 0.52
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (19 bp):
TTTTAAATAAAATATATAT
Found at i:23315 original size:23 final size:24
Alignment explanation
Indices: 23258--23331 Score: 82
Period size: 23 Copynumber: 3.2 Consensus size: 24
23248 TTTTTTTTAA
23258 ATTAAGTTAATAATAAAATATATTT
1 ATTAAGTTAAT-ATAAAATATATTT
* *
23283 AATAACTTAATATAAAA-ATATTT
1 ATTAAGTTAATATAAAATATATTT
* *
23306 TTTAAGTTAATAT-ATATATA-TT
1 ATTAAGTTAATATAAAATATATTT
23328 ATTA
1 ATTA
23332 TGAATTTAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
22 7 0.17
23 19 0.46
24 6 0.15
25 9 0.22
ACGTcount: A:0.50, C:0.01, G:0.03, T:0.46
Consensus pattern (24 bp):
ATTAAGTTAATATAAAATATATTT
Found at i:23320 original size:25 final size:26
Alignment explanation
Indices: 23258--23321 Score: 82
Period size: 25 Copynumber: 2.6 Consensus size: 26
23248 TTTTTTTTAA
23258 ATTAAGTTAATA-ATAAAATATATTT
1 ATTAAGTTAATATATAAAATATATTT
* *
23283 AATAACTTAATATA-AAAATAT-TTT
1 ATTAAGTTAATATATAAAATATATTT
23307 -TTAAGTTAATATATA
1 ATTAAGTTAATATATA
23322 TATATTATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
23 11 0.33
24 4 0.12
25 17 0.52
26 1 0.03
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.44
Consensus pattern (26 bp):
ATTAAGTTAATATATAAAATATATTT
Found at i:29628 original size:33 final size:34
Alignment explanation
Indices: 29566--29645 Score: 101
Period size: 33 Copynumber: 2.4 Consensus size: 34
29556 ATGAATTAGA
29566 AACCCGACCCGAATATCACACTTACAAAAACACG
1 AACCCGACCCGAATATCACACTTACAAAAACACG
** *
29600 -ACCCGACCCGAATATCGTACTTTA-AAAAACCCG
1 AACCCGACCCGAATATCACAC-TTACAAAAACACG
*
29633 AACCTGACCCGAA
1 AACCCGACCCGAA
29646 CCCGAACCCA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
33 26 0.65
34 14 0.35
ACGTcount: A:0.40, C:0.35, G:0.11, T:0.14
Consensus pattern (34 bp):
AACCCGACCCGAATATCACACTTACAAAAACACG
Found at i:29689 original size:30 final size:29
Alignment explanation
Indices: 29647--29707 Score: 95
Period size: 30 Copynumber: 2.1 Consensus size: 29
29637 TGACCCGAAC
29647 CCGAACCCAAATTTTTAAAAAAAATCCGA
1 CCGAACCCAAATTTTTAAAAAAAATCCGA
* *
29676 CCGATCCCGAAATTTTTTAAAAAAATCCGA
1 CCGAACCC-AAATTTTTAAAAAAAATCCGA
29706 CC
1 CC
29708 CGAATACCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 7 0.24
30 22 0.76
ACGTcount: A:0.43, C:0.26, G:0.08, T:0.23
Consensus pattern (29 bp):
CCGAACCCAAATTTTTAAAAAAAATCCGA
Found at i:30511 original size:6 final size:6
Alignment explanation
Indices: 30500--30530 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
30490 CCCTGCGGTC
30500 CTTCAT CTTCAT CTTCAT CCTTCAT CTTCAT
1 CTTCAT CTTCAT CTTCAT -CTTCAT CTTCAT
30531 TGTTTCTGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 18 0.75
7 6 0.25
ACGTcount: A:0.16, C:0.35, G:0.00, T:0.48
Consensus pattern (6 bp):
CTTCAT
Found at i:30524 original size:13 final size:12
Alignment explanation
Indices: 30500--30530 Score: 53
Period size: 13 Copynumber: 2.5 Consensus size: 12
30490 CCCTGCGGTC
30500 CTTCATCTTCAT
1 CTTCATCTTCAT
30512 CTTCATCCTTCAT
1 CTTCAT-CTTCAT
30525 CTTCAT
1 CTTCAT
30531 TGTTTCTGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 6 0.33
13 12 0.67
ACGTcount: A:0.16, C:0.35, G:0.00, T:0.48
Consensus pattern (12 bp):
CTTCATCTTCAT
Found at i:36296 original size:25 final size:26
Alignment explanation
Indices: 36268--36323 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 26
36258 ATGCCTTTTC
36268 ATTTATAAAAT-TTAATTTATTATAT
1 ATTTATAAAATGTTAATTTATTATAT
* * *
36293 ATTTTCTTAATTGTTAATTTATTATAT
1 A-TTTATAAAATGTTAATTTATTATAT
36320 ATTT
1 ATTT
36324 CTTAATTGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
25 1 0.04
26 10 0.38
27 15 0.58
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (26 bp):
ATTTATAAAATGTTAATTTATTATAT
Found at i:36331 original size:26 final size:27
Alignment explanation
Indices: 36279--36331 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
36269 TTTATAAAAT
36279 TTAATTTATTATATATTTTCTTAATTG
1 TTAATTTATTATATATTTTCTTAATTG
36306 TTAATTTATTATATA-TTTCTTAATTG
1 TTAATTTATTATATATTTTCTTAATTG
36332 AAGAGGCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 11 0.42
27 15 0.58
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.62
Consensus pattern (27 bp):
TTAATTTATTATATATTTTCTTAATTG
Found at i:38999 original size:21 final size:19
Alignment explanation
Indices: 38965--39004 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
38955 ATTAAATAAA
*
38965 TATTATAAAATTTATATTT
1 TATTATAAAATTTAAATTT
38984 TATTATAAATAATTTAAATTT
1 TATTAT-AA-AATTTAAATTT
39005 GTTTAATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 2 0.11
21 10 0.56
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TATTATAAAATTTAAATTT
Found at i:39644 original size:30 final size:31
Alignment explanation
Indices: 39594--39652 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
39584 TGGCAGAGAA
* *
39594 ACTAAAATCGGATGGATCGATAATGTTAGGG
1 ACTAAAATCGAATGGATCGATAACGTTAGGG
39625 ACTAAAATCGAAT-GATCGATAACGTTAG
1 ACTAAAATCGAATGGATCGATAACGTTAG
39653 AGATCATTCC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 14 0.54
31 12 0.46
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.25
Consensus pattern (31 bp):
ACTAAAATCGAATGGATCGATAACGTTAGGG
Found at i:44534 original size:23 final size:23
Alignment explanation
Indices: 44516--44599 Score: 114
Period size: 23 Copynumber: 3.7 Consensus size: 23
44506 CTCGTATAAA
44516 TGCACCGAAGTGCCACGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
* *
44539 TGCACCGAAGTGCCGCATAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
* * *
44562 TGTACCGAAGTGTCGCGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
*
44585 TGCACCGTAGTGCCA
1 TGCACCGAAGTGCCA
44600 TATAAGATTG
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 52 1.00
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.20
Consensus pattern (23 bp):
TGCACCGAAGTGCCACGTAGAAT
Found at i:44610 original size:46 final size:46
Alignment explanation
Indices: 44519--44629 Score: 127
Period size: 46 Copynumber: 2.4 Consensus size: 46
44509 GTATAAATGC
*
44519 ACCGAAGTGCCACGTAGAATTGCACCGAAGTGCCGCATAGAATTGT
1 ACCGAAGTGCCACGTAGAATTGCACCGAAGTGCCACATAGAATTGT
* * * *
44565 ACCGAAGTGTCGCGTAGAATTGCACCGTAGTGCCATATA-AGATTGT
1 ACCGAAGTGCCACGTAGAATTGCACCGAAGTGCCACATAGA-ATTGT
* *
44611 CCCTAAG-GACCACGTAGAA
1 ACCGAAGTG-CCACGTAGAA
44630 AATTTACTTA
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
45 2 0.04
46 52 0.96
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.21
Consensus pattern (46 bp):
ACCGAAGTGCCACGTAGAATTGCACCGAAGTGCCACATAGAATTGT
Found at i:44855 original size:30 final size:31
Alignment explanation
Indices: 44821--44880 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
44811 ATATTGTATA
*
44821 AACATATAATTTTC-AT-ACCTTTATCACATG
1 AACATATAATGTTCTATCA-CTTTATCACATG
*
44851 AACATATCATGTTCTATCACTTTATCACAT
1 AACATATAATGTTCTATCACTTTATCACAT
44881 AGCTTATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 12 0.46
31 13 0.50
32 1 0.04
ACGTcount: A:0.35, C:0.22, G:0.03, T:0.40
Consensus pattern (31 bp):
AACATATAATGTTCTATCACTTTATCACATG
Found at i:51491 original size:23 final size:23
Alignment explanation
Indices: 51465--51509 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
51455 CACCACAGCT
*
51465 CGTATAAATGCACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
*
51488 CGTAGAATTGCACCGAAGTGCC
1 CGTAGAAATGCACCGAAGTGCC
51510 GCATAAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.31, C:0.27, G:0.24, T:0.18
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCA
Found at i:51519 original size:23 final size:23
Alignment explanation
Indices: 51473--51538 Score: 80
Period size: 23 Copynumber: 2.9 Consensus size: 23
51463 CTCGTATAAA
* *
51473 TGCACCGAAGTGCCACGTAGAAT
1 TGCACCGAAGTGCCACATAAAAT
*
51496 TGCACCGAAGTGCCGCATAAAAT
1 TGCACCGAAGTGCCACATAAAAT
*
51519 TGCACCGTAA-TGCCATATAA
1 TGCACCG-AAGTGCCACATAA
51539 GATTATCCCT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
23 35 0.95
24 2 0.05
ACGTcount: A:0.33, C:0.26, G:0.21, T:0.20
Consensus pattern (23 bp):
TGCACCGAAGTGCCACATAAAAT
Found at i:51790 original size:30 final size:31
Alignment explanation
Indices: 51756--51814 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
51746 TATTGTATAG
51756 ACATATAAT-TTCCATTC-CTTTATCACATGA
1 ACATATAATGTTCCA-TCACTTTATCACATGA
* *
51786 ACATATCATGTTCTATCACTTTATCACAT
1 ACATATAATGTTCCATCACTTTATCACAT
51815 AGCTTTTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 10 0.40
31 15 0.60
ACGTcount: A:0.32, C:0.24, G:0.03, T:0.41
Consensus pattern (31 bp):
ACATATAATGTTCCATCACTTTATCACATGA
Found at i:52253 original size:63 final size:64
Alignment explanation
Indices: 52159--52314 Score: 167
Period size: 64 Copynumber: 2.4 Consensus size: 64
52149 AATGAAGGTA
* **
52159 TGCATCGATGCAC-CACACCATGCATCGATGCA-TAAAT-CCTATTCGATGTTTATA-TTTAAGG
1 TGCATCGATGCACTC-CA-TATGCATCGATGCACT-AATGCC-ATTCGATGTTTATATTTTAAAA
*
52220 GGG
62 GAG
* * *
52223 TGCATCGATGCACTCCTTATGCATCGATGCACTAATGGCATTCGATGTTTGTATTTTAAAAGAG
1 TGCATCGATGCACTCCATATGCATCGATGCACTAATGCCATTCGATGTTTATATTTTAAAAGAG
* *
52287 TGCATCGATGCACTTCATGTGCATCGAT
1 TGCATCGATGCACTCCATATGCATCGAT
52315 ACACCTTGAA
Statistics
Matches: 78, Mismatches: 10, Indels: 8
0.81 0.10 0.08
Matches are distributed among these distances:
63 29 0.37
64 48 0.62
65 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (64 bp):
TGCATCGATGCACTCCATATGCATCGATGCACTAATGCCATTCGATGTTTATATTTTAAAAGAG
Found at i:52857 original size:13 final size:13
Alignment explanation
Indices: 52839--52864 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
52829 TCTCACGGGG
52839 AAGAAGAAGAAGA
1 AAGAAGAAGAAGA
52852 AAGAAGAAGAAGA
1 AAGAAGAAGAAGA
52865 GAAATCTGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (13 bp):
AAGAAGAAGAAGA
Found at i:53547 original size:16 final size:17
Alignment explanation
Indices: 53497--53547 Score: 54
Period size: 16 Copynumber: 3.1 Consensus size: 17
53487 TAACAATAAC
*
53497 TTAT-TAATGTTTTTTAT
1 TTATATAATGATTTTT-T
53514 TTATATAATGA-TTTTT
1 TTATATAATGATTTTTT
*
53530 TTATATTAT-ATTTTTT
1 TTATATAATGATTTTTT
53546 TT
1 TT
53548 CTTACATCAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
15 1 0.03
16 16 0.53
17 8 0.27
18 5 0.17
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.71
Consensus pattern (17 bp):
TTATATAATGATTTTTT
Found at i:57617 original size:15 final size:15
Alignment explanation
Indices: 57580--57618 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
57570 ATTATAATAA
* *
57580 TATTATTTTAATTTT
1 TATTATTTAAAATTT
57595 TATATATTTAAAATTT
1 TAT-TATTTAAAATTT
57611 TATTATTT
1 TATTATTT
57619 GGAAGTGGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
TATTATTTAAAATTT
Done.